View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_7 (Length: 472)
Name: NF18176_high_7
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 15 - 460
Target Start/End: Complemental strand, 36683056 - 36682614
Alignment:
| Q |
15 |
aagaacaacaagcacatagaggtaatattttttgagccaccacaggacctcgacacagttcatggacggtcatggggtggtacgaaattaaattatctat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36683056 |
aagaacaacaagcacatagaggtaatattttttgagccaccacaggacctcgacacagttcatggacggtcatggggtgatacgaaattaaattatctat |
36682957 |
T |
|
| Q |
115 |
atcatttatttgtctgaggctactaaatatcatattcagtttgtatgatgatcatcgggagaccatgaccttataggaggagatatgctagtactaggga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36682956 |
atcatttatttgtctgaggctactaaatatcatattcagtttgtatgatgatcatcgggagaccatgaccttataggaggagatatgctagtactaggga |
36682857 |
T |
|
| Q |
215 |
tgatgaattatgtgcggtcaagggaaggttaccaccacttgtacagtcaggtgcaggacattcccatgcctccaccatctgtacttgatgttaaagtcca |
314 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36682856 |
tga---attatgtgcagtcaagggaaggttaccaccacttgtacagtcaggtgcaggacattcccaggcctccaccatctgtacttgatgttaaagtcca |
36682760 |
T |
|
| Q |
315 |
tgtagctcaagctctcttggatttcttgttgcatgttatacatgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36682759 |
tgtagctcaagctctcttggatttcttgttgcatgttatacatgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgt |
36682660 |
T |
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| Q |
415 |
cctagttctatttggtatatctcccgaagataccacacctatcgag |
460 |
Q |
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| T |
36682659 |
cctagttctatttggtatatctcccgaagatactacccctatcgag |
36682614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 254 - 460
Target Start/End: Complemental strand, 36693787 - 36693581
Alignment:
| Q |
254 |
tgtacagtcaggtgcaggacattcccatgcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttat |
353 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36693787 |
tgtacagtcaggtgcaggacattcccaggcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttat |
36693688 |
T |
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| Q |
354 |
acatgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagataccacacc |
453 |
Q |
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| T |
36693687 |
acatgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagatactacccc |
36693588 |
T |
|
| Q |
454 |
tatcgag |
460 |
Q |
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||||||| |
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| T |
36693587 |
tatcgag |
36693581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 255 - 460
Target Start/End: Complemental strand, 436029 - 435824
Alignment:
| Q |
255 |
gtacagtcaggtgcaggacattcccatgcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttata |
354 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
436029 |
gtacagtcaggtgcaggacattcccaggcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttata |
435930 |
T |
|
| Q |
355 |
catgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagataccacacct |
454 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
435929 |
cttgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagatactacccct |
435830 |
T |
|
| Q |
455 |
atcgag |
460 |
Q |
| |
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|||||| |
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| T |
435829 |
atcgag |
435824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 436220 - 436085
Alignment:
| Q |
15 |
aagaacaacaagcacatagaggtaatattttttgagccaccacaggacctcgacacagttcatggacggtcatggggtggtacgaaattaaattatctat |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
436220 |
aagaacaacaagcacatagaggtaatattttttgagccaccat-ggacctcgacacagttcatggacggtcatggggtggtacgaaattaaattatctat |
436122 |
T |
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| Q |
115 |
atcatttatttgtctgaggctactaaatatcatattca |
152 |
Q |
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|||| |||||| |||||||||||||||||||||||||| |
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| T |
436121 |
atca-ttatttatctgaggctactaaatatcatattca |
436085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 436085 - 436049
Alignment:
| Q |
220 |
aattatgtgcggtcaagggaaggttaccaccacttgt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
436085 |
aattatgtgcggtcaagggaaggttaccaccacttgt |
436049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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