View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_9 (Length: 433)
Name: NF18176_high_9
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 37140010 - 37140417
Alignment:
| Q |
9 |
gaagaatatgggtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatcctgtaa |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37140010 |
gaagaaaatgggtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatcctgtaa |
37140109 |
T |
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| Q |
109 |
taataacactctcttaacaacatttcatttgtttcactttctctttcttattttatgctatagatatttgaacaaatagaatgg-aaaaaatagtgatca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37140110 |
taataacactctcttaacaacatttcatttgtttcactttctctttcttattttatgctatagatatttgaacaaatagaatggaaaaaaatagtgatca |
37140209 |
T |
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| Q |
208 |
ttttattagttaaagatttttatcatgcaatacatggggggaaccttcaatttcatccgtttttctcaaattttaggggaagaacattggaatg--atat |
305 |
Q |
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| T |
37140210 |
ttttattagat-----tttttatcatgcaatacatggggggaaccttcaatttcatccggttttctcaaattttaggggaagaacattggaatgatatat |
37140304 |
T |
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| Q |
306 |
acatctatgnnnnnnngaactatactataagtttatatatattgctggttataaatatttttctttttggtatatctcattaatcatgtattgccaaaat |
405 |
Q |
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| T |
37140305 |
atatctatgaaaaaaagaactatactataagtttatatatattgctggttataaatatttttctttttggtatatctcattaatcatgtattgccaaaat |
37140404 |
T |
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| Q |
406 |
ctgcagaaacaga |
418 |
Q |
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| T |
37140405 |
ctgcagaaacaga |
37140417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 23335947 - 23336039
Alignment:
| Q |
16 |
atgggtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatcctgtaa |
108 |
Q |
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| T |
23335947 |
atgggtcaactaggaagaaactaagactctctaaagatcaatctgcttttcttgaagaaagtttcaaagaacacaccactcttaatcctgtaa |
23336039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 25902322 - 25902258
Alignment:
| Q |
24 |
acaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaaca |
88 |
Q |
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| T |
25902322 |
acaaggaagaaacttaggctctctaaggatcaatctgcttttcttgaagaaagtttcaaagaaca |
25902258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 40299685 - 40299733
Alignment:
| Q |
66 |
cttgaagatagcttcaaagaacacaccactctcaatcctgtaataataa |
114 |
Q |
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| T |
40299685 |
cttgaagaaagcttcaaagaacacagcactctcaatcctgtaatcataa |
40299733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 41452460 - 41452397
Alignment:
| Q |
27 |
aggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacaca |
90 |
Q |
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||||| ||||| ||||||||||| || ||||||||| |||||||||| | |||||||||||||| |
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| T |
41452460 |
aggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaacaca |
41452397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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