View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_11 (Length: 430)
Name: NF18176_low_11
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 31 - 429
Target Start/End: Complemental strand, 31346492 - 31346096
Alignment:
| Q |
31 |
aattcattcaacaaaaacaa----aagatgcatgctatatgagggagaggtctacaccttatctccatcatatatatggaaaattcttatgatgatatgc |
126 |
Q |
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| T |
31346492 |
aattcattcaacaaaaacaattaaaagatgcatgctatatgagggagaggtctacagcttatctccatcatatatatggaaaattcttatgatgatatgc |
31346393 |
T |
|
| Q |
127 |
gagccgatccaatggaagacacaatatatttgtttattttcttaaggataagctgattcagctattagatgaccataaaattcctctagtcaaggagatc |
226 |
Q |
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| T |
31346392 |
gagccgatccaatggaagacacaatatatttgtttattttcttaaggataagctgattcagctattagatgaccataaaattcctctagtcaaggagatc |
31346293 |
T |
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| Q |
227 |
aaaagcaagaggtattgtaatttgtaaataacatatctcttacaaccaagtcatagctaactgcgccgtcttctgaaaagcta-ttaaaacactactaag |
325 |
Q |
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| T |
31346292 |
aaaagcaagaggtatt-------gtaaataacatatctcttacaaccaagtcatagctaactgcgccgtcttctgaaaagctatttaaaacactactaag |
31346200 |
T |
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| Q |
326 |
aagggcaggtttaagctagctgataagtgggttacataaatggccattgataactgtctactttcagccataaaaatggttacgatatcattctccaaac |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31346199 |
aagggcaggtttaagctagctgataagtgggttacataaatggccattgataactgtctactttcagccataaaaatggttatgatatcattctccaaac |
31346100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 204 - 429
Target Start/End: Complemental strand, 31357015 - 31356789
Alignment:
| Q |
204 |
aaattcctctagtcaaggagatcaaaagcaagaggtattgtaatttgtaaataacatatctcttacaaccaagtcatagctaactgcgccgtcttctgaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |
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| T |
31357015 |
aaattcctctagtcaaggagatcaaaagcaagaggtattgtaatttgtaaataacatatctcttacaaccaagtcatagctaattgcgctgtcttccgaa |
31356916 |
T |
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| Q |
304 |
aagctatt-aaaacactactaagaagggcaggtttaagctagctgataagtgggttacataaatggccattgataactgtctactttcagccataaaaat |
402 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |||| |||||||||||||||| |
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| T |
31356915 |
aagctatttaaaacactactaagaagggcatgtttaagctagctgataagtgggtggcataaatggccattgatagctatctattttcagccataaaaat |
31356816 |
T |
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| Q |
403 |
ggttacgatatcattctccaaacccac |
429 |
Q |
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| T |
31356815 |
ggttacgatatcattctccaaacccac |
31356789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 31357134 - 31357036
Alignment:
| Q |
31 |
aattcattcaacaaaaacaaaagatgcatgctatatgagggagaggtctacaccttatctccatcatatatatggaaaattcttatgatgatatgcgagc |
130 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31357134 |
aattcattcaacaaaaagaaaagatgcatgctatctgagg---aggtctacaccttatctccatcatatatatggaaaattcttatgatgatatgtgagc |
31357038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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