View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_12 (Length: 429)
Name: NF18176_low_12
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 50553404 - 50553806
Alignment:
| Q |
17 |
acatgtgactttataagaagctataattaaagtcaaatatttttgtactaatcgtgttaatatcaaatatannnnnnnggtacgaaatgaagaggatata |
116 |
Q |
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| T |
50553404 |
acatatgactttataagaagctataattaaagtcaaatatttttgtactaatcgtattaatatcaaatatatttttttggtacgaaatgaagaggatata |
50553503 |
T |
|
| Q |
117 |
tttcataaatttgagacaacttctcaattggtccccaatatggaggaggtttaccaaaaactcgctattggtagtgtattttactacaaatttgagcaat |
216 |
Q |
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| T |
50553504 |
tttcataaatttgagacaacttctcaattggtccccaatatggaggaggtttaccaaaaactcgctattggtagtgtattttactacaaatttgagcaat |
50553603 |
T |
|
| Q |
217 |
at--agacatattgtgagactgtctaaac----ttttttcttttcaaactgtctaaacttgatccaactgaacttgaaaaatcctaccatcctttgaaat |
310 |
Q |
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| T |
50553604 |
atagagacatattgtgagactgtctaaactttttttttttttttcaaactgtctaaacttgatccaactgaacttgaaaaatcctaccatcctttgaaat |
50553703 |
T |
|
| Q |
311 |
atactacatggttgcacaaacaaagaaaaactatatggttggtnnnnnnncatttgaacacatcatttaattatttttaaaaatacacgttatttaatca |
410 |
Q |
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| T |
50553704 |
atactacatggttgcacaaacaaagaaaaactatatggttggtaaaaaaacatttgaacacatcatttaatta-ttttaaaaatacacgttatttaatca |
50553802 |
T |
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| Q |
411 |
tttg |
414 |
Q |
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|||| |
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| T |
50553803 |
tttg |
50553806 |
T |
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