View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18176_low_13 (Length: 415)

Name: NF18176_low_13
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18176_low_13
NF18176_low_13
[»] chr6 (12 HSPs)
chr6 (158-405)||(28017820-28018060)
chr6 (158-402)||(27917175-27917412)
chr6 (130-342)||(28047437-28047640)
chr6 (193-348)||(28074634-28074786)
chr6 (129-353)||(28035542-28035757)
chr6 (1-92)||(28017682-28017773)
chr6 (177-336)||(28091631-28091784)
chr6 (169-243)||(27922091-27922165)
chr6 (336-402)||(28001682-28001748)
chr6 (37-92)||(28035449-28035504)
chr6 (169-336)||(28018603-28018767)
chr6 (213-277)||(28534354-28534418)
[»] chr5 (1 HSPs)
chr5 (170-342)||(1440036-1440205)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 158 - 405
Target Start/End: Original strand, 28017820 - 28018060
Alignment:
Q  158 taatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagata 257  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||    
T  28017820 taatatctattatcaaaaccatgtctctgacatcatgatttg-ttgttgtgttatgttaggtatcaatcaccttattggagatcacttgcagcaaaggta 28017918  T
Q  258 attcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattcattccttcc 357  Q
    |||||||||||||||||| |||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||    |||||||||||| ||    
T  28017919 attcaggatgcatggagaaacatgaagaagtgtctaattcaagc---taatgccacacaaaatgattatcaaacattgagg----tcattcattcctccc 28018011  T
Q  358 atttctttgttgtca-ttctgttcatattcagcatgtcttcaccctatg 405  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  28018012 atttctttgttgtcatttctgttgatattcagcatgtcttcaccctatg 28018060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 158 - 402
Target Start/End: Original strand, 27917175 - 27917412
Alignment:
Q  158 taatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagata 257  Q
    |||||||| | |||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||| || |    
T  27917175 taatatctcttatcataactatgtctctgacatcatgatatggttgttgtgttatgttaggtatgaatcaccttattggagatcccttgcagcaacgaga 27917274  T
Q  258 attcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattcattccttcc 357  Q
    ||||||| |||||||||||||| ||||||| ||||||  | |||    |||||||||||||||||||||||||||||||||    |||||||||||||||    
T  27917275 attcaggttgcatggagatacaggaagaagcgtctaaggccagc---aaataccacacaaaatgattatcaaacattgagg----tcattcattccttcc 27917367  T
Q  358 atttctttgttgtcattctgttcatattcagcatgtcttcaccct 402  Q
    ||||| |||||||| ||||||  ||||||||||||||||||||||    
T  27917368 atttccttgttgtctttctgtcgatattcagcatgtcttcaccct 27917412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 130 - 342
Target Start/End: Original strand, 28047437 - 28047640
Alignment:
Q  130 acaagtgtgttatatacatgcctaatagtaatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcacc 229  Q
    ||||||||||||| |||||||||||||      ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  28047437 acaagtgtgttatttacatgcctaata------tctattatcaaaaccatgtctctgacatcatgatttggttgttgtgttatgttaggtatcaatcacc 28047530  T
Q  230 ttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaa 329  Q
    |||||||||||||| ||||||||| | |||||||| ||||||||||  || ||||||| ||||||  | |||   |||||||||||||||| ||||||||    
T  28047531 ttattggagatcacttgcagcaaacagaattcaggttgcatggagaagcaggaagaagcgtctaagacgagc---taataccacacaaaattattatcaa 28047627  T
Q  330 acattgaggtcat 342  Q
    |||||||||||||    
T  28047628 acattgaggtcat 28047640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 193 - 348
Target Start/End: Original strand, 28074634 - 28074786
Alignment:
Q  193 tgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtct 292  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  28074634 tgatttggttgttgtgttatgttaggtatgaatcaccttattggagattccttgcagcaaaaagaattcaggatgcatggagaaacatgaagaagtgtct 28074733  T
Q  293 aattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattc 348  Q
    || ||||||   |||||||||||||||||||||||||||||| |||||||||||||    
T  28074734 aagtcaagc---taataccacacaaaatgattatcaaacattaaggtcattcattc 28074786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 129 - 353
Target Start/End: Original strand, 28035542 - 28035757
Alignment:
Q  129 tacaagtgtgttatatacatgcctaatagtaatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcac 228  Q
    |||||||||||||| |||||||||||||      | ||  |||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||    
T  28035542 tacaagtgtgttatttacatgcctaata------tatagtatcaaaaccatggctctgacatcatgatttggttgttgtgtcatgttaggtatcaatcac 28035635  T
Q  229 cttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatca 328  Q
    ||||||||||||||| ||||||||| | |||||||| |||||||||  | | ||||||| |||||| ||||||   |||||||||||||||| |||||||    
T  28035636 cttattggagatcacttgcagcaaacagaattcaggttgcatggagcaataggaagaagcgtctaagtcaagc---taataccacacaaaataattatca 28035732  T
Q  329 aacattgaggtcattcattcattcc 353  Q
    ||||| | |||||||||||| ||||    
T  28035733 aacatcgtggtcattcattccttcc 28035757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28017682 - 28017773
Alignment:
Q  1 ctacctataccacttatatatgcattgtccgcaactaatatggaactcttaacaatttgtgtatctgatacaaaaccatcatttttctatat 92  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28017682 ctacctataccacttatatatacattgtcctcaactaatatggaactcttaacaatttttgtatctgatacaaaaccatcatttttctatat 28017773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 336
Target Start/End: Original strand, 28091631 - 28091784
Alignment:
Q  177 catgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagat 276  Q
    |||| ||||||||| ||||||||||| |   |||| ||||||||||||||| |||| |||||||||| ||||||||| | ||||| || |||||||||||    
T  28091631 catgactctgacatgatgatttggttat---gttatgttaggtatgaatcaacttactggagatcacttgcagcaaatagaattcgggttgcatggagat 28091727  T
Q  277 acatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattga 336  Q
    ||| ||||||  |||||| | ||||   ||||||||||||||||||||||||||||||||    
T  28091728 acaggaagaaacgtctaagtaaagc---taataccacacaaaatgattatcaaacattga 28091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 27922091 - 27922165
Alignment:
Q  169 atcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcac 243  Q
    |||||||||||| ||||||||| |||||||| |  |||||||| |||||||||||||| |||||| ||| |||||    
T  27922091 atcaaaaccatggctctgacataatgatttgatgattgtgttatgttaggtatgaatcgccttatgggaaatcac 27922165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 28001682 - 28001748
Alignment:
Q  336 aggtcattcattcattccttccatttctttgttgtcattctgttcatattcagcatgtcttcaccct 402  Q
    |||||||| ||| |||||||||||||| ||||| || ||||| | ||||||||||||||||||||||    
T  28001682 aggtcattaatttattccttccatttcattgttctctttctggtgatattcagcatgtcttcaccct 28001748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 28035449 - 28035504
Alignment:
Q  37 aatatggaactcttaacaatttgtgtatctgatacaaaaccatcatttttctatat 92  Q
    |||||||||||||||||||| ||  ||||||||||||| || ||||||||||||||    
T  28035449 aatatggaactcttaacaatatgcatatctgatacaaatccgtcatttttctatat 28035504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 336
Target Start/End: Original strand, 28018603 - 28018767
Alignment:
Q  169 atcaaaaccatgtctctgacatcatgatttg--gttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggat 266  Q
    |||||||||||| |||||||||  |||||||  | | |||||||| |||||||||||||| |||||| ||| ||||| |  | |||| | |||||||| |    
T  28018603 atcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaaatcacatagaccaaacagaattcaggtt 28018702  T
Q  267 gcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattga 336  Q
    |||||||||   | ||||||| ||||||  | ||||||||      ||||||||||| ||||||||||||    
T  28018703 gcatggagaagtaggaagaagcgtctaagacgagctaata-----ccacaaaatgatcatcaaacattga 28018767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 28534354 - 28534418
Alignment:
Q  213 gttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagata 277  Q
    ||||||||||||||||||||||||||||| |  |||||||    |||||||| ||||||||||||    
T  28534354 gttaggtatgaatcaccttattggagatccctagcagcaacccgaattcaggttgcatggagata 28534418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 170 - 342
Target Start/End: Original strand, 1440036 - 1440205
Alignment:
Q  170 tcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgca 269  Q
    ||||||| ||| ||||| | | |||||||||||||| || || ||||||||||||||  | ||||||||||||| ||||||||| | ||||| || ||||    
T  1440036 tcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgca 1440135  T
Q  270 tggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcat 342  Q
    |||||||||| ||||||| |||||| || |||   |||||||| ||||||||||||||||||||||| |||||    
T  1440136 tggagatacaggaagaagcgtctaagtcgagc---taataccagacaaaatgattatcaaacattgatgtcat 1440205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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