View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18176_low_14 (Length: 403)

Name: NF18176_low_14
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18176_low_14
NF18176_low_14
[»] chr7 (8 HSPs)
chr7 (224-336)||(8015936-8016048)
chr7 (103-140)||(10901731-10901768)
chr7 (103-140)||(46645795-46645832)
chr7 (103-140)||(13702111-13702148)
chr7 (103-140)||(46758328-46758365)
chr7 (103-139)||(34267498-34267534)
chr7 (103-139)||(35835646-35835682)
chr7 (103-139)||(45640039-45640075)
[»] chr3 (11 HSPs)
chr3 (103-140)||(9114097-9114134)
chr3 (103-140)||(25883935-25883972)
chr3 (103-140)||(15085631-15085668)
chr3 (103-140)||(27329879-27329916)
chr3 (103-140)||(41710669-41710706)
chr3 (103-140)||(46767429-46767466)
chr3 (103-140)||(51879181-51879218)
chr3 (103-135)||(3614027-3614059)
chr3 (103-139)||(5636746-5636782)
chr3 (103-139)||(25833909-25833945)
chr3 (108-140)||(41253701-41253733)
[»] chr2 (7 HSPs)
chr2 (103-140)||(32854618-32854655)
chr2 (103-140)||(5947952-5947989)
chr2 (103-140)||(10058955-10058992)
chr2 (103-140)||(15939375-15939412)
chr2 (103-140)||(18862338-18862375)
chr2 (108-140)||(14518370-14518402)
chr2 (104-140)||(25622207-25622243)
[»] chr1 (5 HSPs)
chr1 (103-140)||(34459502-34459539)
chr1 (103-140)||(12613263-12613300)
chr1 (103-139)||(1151846-1151882)
chr1 (103-139)||(7180561-7180597)
chr1 (104-140)||(49907366-49907402)
[»] chr5 (8 HSPs)
chr5 (103-139)||(24250572-24250608)
chr5 (103-140)||(3741040-3741077)
chr5 (103-140)||(3821368-3821405)
chr5 (103-140)||(36564369-36564406)
chr5 (103-139)||(6558888-6558924)
chr5 (104-140)||(18597494-18597530)
chr5 (103-139)||(21918139-21918175)
chr5 (103-139)||(24133043-24133079)
[»] chr8 (9 HSPs)
chr8 (103-140)||(13059124-13059161)
chr8 (103-140)||(13105177-13105214)
chr8 (103-140)||(36035126-36035163)
chr8 (103-140)||(37708777-37708814)
chr8 (103-140)||(44053387-44053424)
chr8 (103-139)||(5328514-5328550)
chr8 (104-140)||(9735789-9735825)
chr8 (103-139)||(21548444-21548480)
chr8 (108-140)||(31024380-31024412)
[»] chr6 (1 HSPs)
chr6 (103-140)||(32621529-32621566)
[»] chr4 (7 HSPs)
chr4 (103-140)||(23176669-23176706)
chr4 (103-140)||(30305885-30305922)
chr4 (103-140)||(36099130-36099167)
chr4 (108-140)||(23142705-23142737)
chr4 (103-139)||(42231599-42231635)
chr4 (103-139)||(48615419-48615455)
chr4 (103-139)||(54029640-54029676)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 224 - 336
Target Start/End: Original strand, 8015936 - 8016048
Alignment:
Q  224 tgatttgggttgtaaaagcgtaaaatatgattctgcgtatcctagttggcaaatgaagaagcatctagaaccaacgagaaaattcataaaacgtgtaaaa 323  Q
    |||||||  |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8015936 tgatttgatttgtaaaagcgtaaaatatgatactgggtatcctagttggcaaatgaagaagcatctagaaccaacgagaaaattcataaaacgtgtaaaa 8016035  T
Q  324 agcgctttcacac 336  Q
    |||||||||||||    
T  8016036 agcgctttcacac 8016048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 10901768 - 10901731
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  10901768 gtcaagtagcctagtgactggagctcacacattataaa 10901731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 46645832 - 46645795
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| |||||||||||||||||||||||||||||||||    
T  46645832 gtcaggtagcctagtgactggagctcacacattttaaa 46645795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 13702148 - 13702111
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  13702148 gtcaggtagcctagtggctggagctcacacattttaaa 13702111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 46758365 - 46758328
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  46758365 gtcaggtagcctagtggctggagctcacacattttaaa 46758328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 34267498 - 34267534
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  34267498 gtcaagtagcctagtgactagagctcacacaatttaa 34267534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 35835646 - 35835682
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    |||||||||||||||| |||||||||||||| |||||    
T  35835646 gtcaagtagcctagtggctggagctcacacaatttaa 35835682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 45640039 - 45640075
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  45640039 gtcaagtagcctagtgactagagctcacacaatttaa 45640075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 9114134 - 9114097
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9114134 gtcaagtagcctagtgactggagctcacacattttaaa 9114097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 25883935 - 25883972
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||||||||||||| |||||||||||||||||||||    
T  25883935 gtcaagtagcctagtggctggagctcacacattttaaa 25883972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 15085631 - 15085668
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  15085631 gtcaggtagcctagtggctggagctcacacattttaaa 15085668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 27329879 - 27329916
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  27329879 gtcaggtagcctagtggctggagctcacacattttaaa 27329916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 41710706 - 41710669
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  41710706 gtcaggtagcctagtggctggagctcacacattttaaa 41710669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 46767466 - 46767429
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  46767466 gtcaggtagcctagtggctggagctcacacattttaaa 46767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 51879218 - 51879181
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  51879218 gtcaggtagcctagtggctggagctcacacattttaaa 51879181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 3614027 - 3614059
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacatt 135  Q
    ||||||||||||||||||||||| |||||||||    
T  3614027 gtcaagtagcctagtgactggagatcacacatt 3614059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 5636746 - 5636782
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  5636746 gtcaagtagcctagtgactagagctcacacaatttaa 5636782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 25833945 - 25833909
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  25833945 gtcaagtagcctagtgactagagctcacacaatttaa 25833909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 41253701 - 41253733
Alignment:
Q  108 gtagcctagtgactggagctcacacattttaaa 140  Q
    ||||||||||| |||||||||||||||||||||    
T  41253701 gtagcctagtggctggagctcacacattttaaa 41253733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 32854655 - 32854618
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||||||||||||| |||||||||||||||||||||    
T  32854655 gtcaagtagcctagtggctggagctcacacattttaaa 32854618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 5947989 - 5947952
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  5947989 gtcaggtagcctagtggctggagctcacacattttaaa 5947952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 10058992 - 10058955
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  10058992 gtcaagtagcctagtggctggagcttacacattttaaa 10058955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 15939412 - 15939375
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  15939412 gtcaggtagcctagtggctggagctcacacattttaaa 15939375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 18862375 - 18862338
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||||||||||||| || ||||||||||||||||||    
T  18862375 gtcaagtagcctagtggctagagctcacacattttaaa 18862338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 14518402 - 14518370
Alignment:
Q  108 gtagcctagtgactggagctcacacattttaaa 140  Q
    ||||||||||| |||||||||||||||||||||    
T  14518402 gtagcctagtggctggagctcacacattttaaa 14518370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 25622207 - 25622243
Alignment:
Q  104 tcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  25622207 tcaagtagtctagtgactggagctcatacattttaaa 25622243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 34459502 - 34459539
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||||||||||||||| |||||||||||||||||||    
T  34459502 gtcaagtagcctagtgaccggagctcacacattttaaa 34459539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 12613300 - 12613263
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  12613300 gtcaagcagcctagtgattggagctcacacattttaaa 12613263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 1151882 - 1151846
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  1151882 gtcaagtagcctagtgactagagctcacacaatttaa 1151846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 7180561 - 7180597
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  7180561 gtcaagtagcctagtgactagagctcacacaatttaa 7180597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 49907402 - 49907366
Alignment:
Q  104 tcaagtagcctagtgactggagctcacacattttaaa 140  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  49907402 tcaagtagcctagtggctggagttcacacattttaaa 49907366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 24250608 - 24250572
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||||||||||||||| |||||    
T  24250608 gtcaagtagcctagtgactggagctcacacaatttaa 24250572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 3741077 - 3741040
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  3741077 gtcaggtagcctagtggctggagctcacacattttaaa 3741040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 3821368 - 3821405
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  3821368 gtcaggtagcctagtggctggagctcacacattttaaa 3821405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36564369 - 36564406
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||||| | |||||||||||||||||||||||||||    
T  36564369 gtcaagtaacatagtgactggagctcacacattttaaa 36564406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 6558924 - 6558888
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  6558924 gtcaagtagcctagtgactagagctcacacaatttaa 6558888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 18597530 - 18597494
Alignment:
Q  104 tcaagtagcctagtgactggagctcacacattttaaa 140  Q
    ||||||||||||||| || ||||||||||||||||||    
T  18597530 tcaagtagcctagtggctagagctcacacattttaaa 18597494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 21918175 - 21918139
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  21918175 gtcaagtagcctagtgactagagctcacacaatttaa 21918139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 24133079 - 24133043
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  24133079 gtcaagtagcctagtgactagagctcacacaatttaa 24133043  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 13059124 - 13059161
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  13059124 gtcaagtagcctagtggctggagcacacacattttaaa 13059161  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 13105214 - 13105177
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||||||||| || ||||||||||||||||||||||||    
T  13105214 gtcaagtagcataatgactggagctcacacattttaaa 13105177  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36035126 - 36035163
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  36035126 gtcaggtagcctagtggctggagctcacacattttaaa 36035163  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 37708814 - 37708777
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  37708814 gtcaggtagcctagtggctggagctcacacattttaaa 37708777  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 44053387 - 44053424
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  44053387 gtcaggtagcctagtggctggagctcacacattttaaa 44053424  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 5328514 - 5328550
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    |||||||||||||||| || |||||||||||||||||    
T  5328514 gtcaagtagcctagtggctagagctcacacattttaa 5328550  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 9735825 - 9735789
Alignment:
Q  104 tcaagtagcctagtgactggagctcacacattttaaa 140  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  9735825 tcaagtagcatagtgactagagctcacacattttaaa 9735789  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 21548444 - 21548480
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    |||||||||||||||| || |||||||||||||||||    
T  21548444 gtcaagtagcctagtggctagagctcacacattttaa 21548480  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 31024412 - 31024380
Alignment:
Q  108 gtagcctagtgactggagctcacacattttaaa 140  Q
    ||||||||||| |||||||||||||||||||||    
T  31024412 gtagcctagtggctggagctcacacattttaaa 31024380  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 32621529 - 32621566
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  32621529 gtcaggtagcctagtggctggagctcacacattttaaa 32621566  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 23176669 - 23176706
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  23176669 gtcaggtagcctagtggctggagctcacacattttaaa 23176706  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 30305922 - 30305885
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  30305922 gtcaggtagcctagtggctggagctcacacattttaaa 30305885  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36099130 - 36099167
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaaa 140  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  36099130 gtcaggtagcctagtggctggagctcacacattttaaa 36099167  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 23142705 - 23142737
Alignment:
Q  108 gtagcctagtgactggagctcacacattttaaa 140  Q
    ||||||||||| |||||||||||||||||||||    
T  23142705 gtagcctagtggctggagctcacacattttaaa 23142737  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 42231635 - 42231599
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  42231635 gtcaagtagcctagtgactagagctcacacaatttaa 42231599  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 48615419 - 48615455
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  48615419 gtcaagtagcctagtgactagagctcacacaatttaa 48615455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 54029676 - 54029640
Alignment:
Q  103 gtcaagtagcctagtgactggagctcacacattttaa 139  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  54029676 gtcaagtagcctagtgactagagctcacacaatttaa 54029640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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