View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_19 (Length: 316)
Name: NF18176_low_19
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 7907999 - 7908216
Alignment:
| Q |
19 |
ggagtcacagaacacgatactcccggaggatctgattatcgaaatcctttctagagttgaaccaagcgattatctgcaattgaggtgcgtatgcaagtgg |
118 |
Q |
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| T |
7907999 |
ggagtcacagaacacgatactcccggaggatctgattatcgaaatcctttctagatttgaaccaagcgattatctgcaattgaggtgcgtatgcaagtgg |
7908098 |
T |
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| Q |
119 |
tggaaatcacttgtttttgatcgttatttattggagaagcacattcgcatatcggtaactgaaatcatgtatctagtttgtaatgccattaaacgattaa |
218 |
Q |
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| T |
7908099 |
tggaaatcacttgttcttgatcgttattttttggagaagcacattcggatatcggtaactgaaatcatgtatctagtttgtaatgccgtaaaacgattaa |
7908198 |
T |
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| Q |
219 |
agcctttcgagttgcatc |
236 |
Q |
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| T |
7908199 |
agcctttcgagttgcatc |
7908216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 7348816 - 7348696
Alignment:
| Q |
19 |
ggagtcacagaacacgatactcccggaggatctgattatcgaaatcctttctagagttgaaccaagcgattatctgcaattgaggtgcgtatgcaagtgg |
118 |
Q |
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| T |
7348816 |
ggagtcaccgaacacaattctcccggaggagttgatgatcgaaatcctttctagagttgagtcaagcaatcctcaggaattaaggtgtgtttgcaagttg |
7348717 |
T |
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| Q |
119 |
tggaaatcacttgtttttgat |
139 |
Q |
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| T |
7348716 |
tggaaatcactagtttttgat |
7348696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 7365945 - 7365832
Alignment:
| Q |
19 |
ggagtcacagaacacgatactcccggaggatctgattatcgaaatcctttctagagttgaaccaagcgattatctgcaattgaggtgcgtatgcaagtgg |
118 |
Q |
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| T |
7365945 |
ggagtcaccgaccacgattctcccggtggaactgatgatcgaaatccttgctagagttgactcaaacaatcctctgcagttgaggtcagtatgcaagtgg |
7365846 |
T |
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| Q |
119 |
tggaaatcacttgt |
132 |
Q |
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| T |
7365845 |
tggaaatctcttgt |
7365832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 7323351 - 7323262
Alignment:
| Q |
51 |
tgattatcgaaatcctttctagagttgaaccaagcgattatctgcaattgaggtgcgtatgcaagtggtggaaatcacttgtttttgatc |
140 |
Q |
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| T |
7323351 |
tgatgatcgaaatcctttctagagttgattcaagcaatactctgcaattgaggtgcgtttgcaacttgtggaattcgctagttcttgatc |
7323262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 7332827 - 7332778
Alignment:
| Q |
91 |
tctgcaattgaggtgcgtatgcaagtggtggaaatcacttgtttttgatc |
140 |
Q |
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| T |
7332827 |
tctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatc |
7332778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 7342315 - 7342220
Alignment:
| Q |
31 |
cacgatactcccggaggatctgattatcgaaatcctttctagagttgaaccaagcgattatctgcaattgaggtgcgtatgcaagtggtggaaatc |
126 |
Q |
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| T |
7342315 |
cacgattctcccagaggaattgatgattgaaatcctttctagggttgagtcaagcgttactctgcaactgaggtgcgtttccaagttgtggaaatc |
7342220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 7370980 - 7370907
Alignment:
| Q |
50 |
ctgattatcgaaatcctttctagagttgaaccaagcgattatctgcaattgaggtgcgtatgcaagtggtggaa |
123 |
Q |
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| T |
7370980 |
ctgataatcgagatcatttctagagttgattcaagcaatactctgcaattgaggtgtgtttgcaagttgtggaa |
7370907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 7337120 - 7337032
Alignment:
| Q |
35 |
atactcccggaggatctgattatcgaaatcctttctagagttgaaccaagcgattatctgcaattgaggtgcgtatgcaagtggtggaa |
123 |
Q |
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| T |
7337120 |
atactaccggatgaactgattatcgaaatcctttttagggttgaatcaagcaatccttttcaattgatgtgtgtttgcaagttgtggaa |
7337032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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