View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_20 (Length: 314)
Name: NF18176_low_20
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 8016135 - 8016319
Alignment:
| Q |
111 |
accctaacacaaacacttttctctcttct-cattctttcacaaaaaccaaaccctagcgttcttgaatccatcaacaatggccggaaaaggagaaggacc |
209 |
Q |
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| T |
8016135 |
accctaacacaaactcttttctctcttttacatt--ttctcgtaaaccaaaccctagcgttcttgaattcatcaacaatggccggaaaaggagaaggtcc |
8016232 |
T |
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| Q |
210 |
tgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaatgatcaagg |
296 |
Q |
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| T |
8016233 |
tgcaatcggaatagatctgggaacaacgtactcgtgtgttggagtatggcaacacgatcgtgttgagatcattgctaatgatcaagg |
8016319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 8104229 - 8104141
Alignment:
| Q |
208 |
cctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaatgatcaagg |
296 |
Q |
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| T |
8104229 |
cctgcaatcggaatagatctgggaacaacgtactcgtgtgttggagtatggcaacacgatcgtgttgagatcattgctaatgatcaagg |
8104141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 39987151 - 39987039
Alignment:
| Q |
185 |
caatggccggaaaaggagaaggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgc |
284 |
Q |
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| T |
39987151 |
caatggccggaaagggagaaggaccagcgatcggaatcgatcttggaaccacatactcatgcgtcggtgtatggcaacatgaccgtgttgaaatcatcgc |
39987052 |
T |
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| Q |
285 |
caatgatcaaggt |
297 |
Q |
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| T |
39987051 |
caacgaccaaggt |
39987039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 8016076 - 8016126
Alignment:
| Q |
16 |
aagaacattctagaatctcaaaaactccattatataaagaccttcacaatt |
66 |
Q |
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| T |
8016076 |
aagaacattctagaatcccaaaaactctattatataaacactttcacaatt |
8016126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 23595272 - 23595378
Alignment:
| Q |
187 |
atggccggaaaaggagaaggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgcca |
286 |
Q |
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| T |
23595272 |
atggctggaaaaggagaaggacctgcaattggaatagatttgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaa |
23595371 |
T |
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| Q |
287 |
atgatca |
293 |
Q |
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| T |
23595372 |
atgatca |
23595378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 23586439 - 23586545
Alignment:
| Q |
187 |
atggccggaaaaggagaaggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgcca |
286 |
Q |
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| T |
23586439 |
atggctggaaaaggcgaaggacctgcaattggaatagatttgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaa |
23586538 |
T |
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| Q |
287 |
atgatca |
293 |
Q |
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| T |
23586539 |
atgatca |
23586545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 17716074 - 17716166
Alignment:
| Q |
205 |
ggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaatgatcaaggt |
297 |
Q |
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| T |
17716074 |
ggaccagcgatcgggatcgatctgggaaccacatactcatgcgtaggtgtatggcaacatgaccgtgttgaaatcatcgccaacgaccaaggt |
17716166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 17666070 - 17666162
Alignment:
| Q |
205 |
ggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaatgatcaaggt |
297 |
Q |
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| T |
17666070 |
ggaccagcgattgggatcgatctcggaaccacatactcatgcgtcggtgtatggaaacatgaccgtgttgaaatcatcgccaacgaccaaggt |
17666162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 17621332 - 17621414
Alignment:
| Q |
205 |
ggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaa |
287 |
Q |
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| T |
17621332 |
ggaccagcgattgggatcgatctcggaaccacatactcatgcgtaggtgtatgtcaacatgaccgtgttgaaatcatcgccaa |
17621414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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