View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_21 (Length: 301)
Name: NF18176_low_21
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 6551988 - 6552270
Alignment:
| Q |
1 |
cttttgatagaacttgcaagcatcaagggagtgctatgatatcatattatgatattagagctgcccaaaatgcaatgagagcactcaataatagactctt |
100 |
Q |
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| T |
6551988 |
cttttgatagaacttgcaagcatcaagggagtgctatgatatcatattatgatattagagctgcccaaaatgcaatgagagcactcaataatagactctt |
6552087 |
T |
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| Q |
101 |
cggccgcaagaaattcgacattcattatcctattccaaaggtcggatgccacatttttatttcctcattgaaacttagtcttaattattttttgtgtctg |
200 |
Q |
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| T |
6552088 |
cggccgcaagaagttcgacattcattatcctattccaaaggtcggatgccacatttttatttcctcattgaaacttagtcttaatta--ttttgtgtctg |
6552185 |
T |
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| Q |
201 |
tatgaatcagttgtgattataactactcatagttagagcttgtttgtatatacttatgactttgtctactgatataagtatttgt |
285 |
Q |
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| T |
6552186 |
catgaatcagttgtgattataactactcatagttagagcttgtttgtatatacttatgactttgtctactgatataagtatttgt |
6552270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 49060943 - 49060770
Alignment:
| Q |
1 |
cttttgatagaacttgcaagcatcaagggagtgctatgatatcatattatgatattagagctgcccaaaatgcaatgagagcactcaataatagactctt |
100 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | ||| |||||| |
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| T |
49060943 |
cttttgatagagattgcaagcatcaagggaatgctatgatatcatattatgatatgagagctgcccaaaaagcaatgagagcactccagaatcaactctt |
49060844 |
T |
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| Q |
101 |
cggccgcaagaaattcgacattcattatcctattccaaaggtcggatgccacatttttatttcctcattgaaact |
175 |
Q |
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| T |
49060843 |
cagctgcaggaaatttgacattcattattcgataccaaaggttcgatgctgcatttttaatt-ctcattgaaact |
49060770 |
T |
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