View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18176_low_22 (Length: 299)
Name: NF18176_low_22
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_22 |
 | |
|
| [»] chr2 (10 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 12051988 - 12051700
Alignment:
| Q |
11 |
cacagagagataacaaaaatagttcacaataatatagataaaccgaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggt |
110 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12051988 |
cacaaagagataacaacaatagttcacaataatatagataaaccgaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggt |
12051889 |
T |
|
| Q |
111 |
tgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaaattaagcaaaggtaggaaggttattgttgttttcactatcatataaagagtctcc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12051888 |
tgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaaattaagcaaaggtaggaaggttattgttgttttcactatcatataaagagtcccc |
12051789 |
T |
|
| Q |
211 |
aaagataaacagactaggtacttgatatttctcatagacacggtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaacc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12051788 |
aaagataaacagactaggtacttgatatttctcatagacactgtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaacc |
12051700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 28 - 299
Target Start/End: Complemental strand, 12059392 - 12059132
Alignment:
| Q |
28 |
aatagttcacaataatatagataaaccgaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaag |
127 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| ||| | || || ||| |
|
|
| T |
12059392 |
aatagttcataataatatagttaaattgaaagaatgttacttattatgtcaattgcagttcgaccattggtaaatcttctggctgcactgatcggggag- |
12059294 |
T |
|
| Q |
128 |
gaatcgattccataaggtttgtaatcaaattaagcaaaggtaggaaggttattgttgttttcactatcatataaagagtctccaaagataaacagactag |
227 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||| ||||| |
|
|
| T |
12059293 |
---tcgattccataaggtttctaatcaaattcagtaaaggtaggaaggttattgttgttttccctatcat---aagagtctccaatg--aaacacactag |
12059202 |
T |
|
| Q |
228 |
gtacttgatatttctcatagacacggtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaacc |
299 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12059201 |
gtacttgatatttctc--agacacagtgttgtaaatagtttgtggacatgaaaagaataagcatcaccaacc |
12059132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 55 - 299
Target Start/End: Original strand, 5573419 - 5573659
Alignment:
| Q |
55 |
gaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatca |
154 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||| || | || ||| | || ||||||||||||||||||| | |
|
|
| T |
5573419 |
gaaagaatgttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatcg--gaaag--tcaattccataaggtttgtaatta |
5573514 |
T |
|
| Q |
155 |
aattaagcaaaggtaggaaggttattgttgttttcactatcatataaagagtctccaaagataaacagactaggtacttgatatttctcatagacacggt |
254 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| | || ||| |||||| ||||| ||| ||||| | |
|
|
| T |
5573515 |
gattttgcagaggtaggaaggttattgttgtttccactatcagataaagaatctccaaagataaatacacaaggcacttgagatttcccattgacacatt |
5573614 |
T |
|
| Q |
255 |
gttgtaaatagtttgcggacatgaaaagaataagcatcaccaacc |
299 |
Q |
| |
|
||| ||||||||||| |||| ||||| |||||| | |||||||| |
|
|
| T |
5573615 |
gtttaaaatagtttgcagacaagaaaacaataagaaccaccaacc |
5573659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 288
Target Start/End: Original strand, 5586951 - 5587179
Alignment:
| Q |
56 |
aaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaa |
155 |
Q |
| |
|
|||||| |||||| ||||||| ||||| ||||||||||||||||||||||| |||| ||| | || ||| | ||||||||||| || ||||||| | |
|
|
| T |
5586951 |
aaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcg--gaaag--tcgattccatagggattgtaattag |
5587046 |
T |
|
| Q |
156 |
attaagcaaaggtaggaaggttattgttgttttcactatcatataaagagtctccaaagataaacagactaggtacttgatatttctcatagacacggtg |
255 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| ||| ||||| ||||| ||| ||||| || |
|
|
| T |
5587047 |
attttgcagaggtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttgggatttcccattgacacattg |
5587146 |
T |
|
| Q |
256 |
ttgtaaatagtttgcggacatgaaaagaataag |
288 |
Q |
| |
|
||| ||||||||||| || | ||||| |||||| |
|
|
| T |
5587147 |
ttgcaaatagtttgcagaaaagaaaacaataag |
5587179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 12064684 - 12064584
Alignment:
| Q |
193 |
atcatataaagagtctccaaagataaacagactaggtacttgatatttctcatagacacggtgttgtaaatagtttgcggacatgaaaagaataagcatc |
292 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12064684 |
atcatatagagagtctccaaagataaacagacta----cttgatatttctcatagacac--tgttgtaaatagtttgcggacatgaaaagaataagcatc |
12064591 |
T |
|
| Q |
293 |
accaacc |
299 |
Q |
| |
|
||||||| |
|
|
| T |
12064590 |
accaacc |
12064584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 5576591 - 5576746
Alignment:
| Q |
65 |
tacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaaattaagcaa |
164 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| ||||| ||| | || ||||| || ||||||||||||||||||| | ||| ||| |
|
|
| T |
5576591 |
tacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcg-ggaag---tcaattccataaggtttgtaattagattttgcag |
5576686 |
T |
|
| Q |
165 |
aggtaggaaggttattgttgttttcactatcatataaagagtctccaaagataaacagac |
224 |
Q |
| |
|
|||| |||||||| || |||||| |||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
5576687 |
aggtgggaaggttgttattgtttccactatcagataaagaatctccaaagataaaaagac |
5576746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 12047520 - 12047434
Alignment:
| Q |
214 |
gataaacagactaggtacttgatatttctcatagacacggtgttgtaaatagtttgc-ggacatgaaaagaataagcatcaccaacc |
299 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||||| |||| ||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
12047520 |
gataaacacactaggttcttgatacttctcatagacacagtgtcgtaaatagtttgcaggacatggaaagaataggcatcaccaacc |
12047434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 299
Target Start/End: Original strand, 5593184 - 5593426
Alignment:
| Q |
56 |
aaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaa |
155 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||| | || ||||| ||||| || ||||| ||||||| |
|
|
| T |
5593184 |
aaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcg-ggaag---tcgatcccgtaaggattgtaatttg |
5593279 |
T |
|
| Q |
156 |
attaagcaaag---gtaggaaggttattgttgttttcactatcatataaagagtctccaaagataaacagactaggtacttgatatttctcatagacacg |
252 |
Q |
| |
|
|| | | || | ||||||||| ||||||||| ||| |||| ||||||| |||||||||||||| |||| ||| ||||| ||||| ||| |||| |
|
|
| T |
5593280 |
atcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttgggatttcccattgacaga |
5593379 |
T |
|
| Q |
253 |
gtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaacc |
299 |
Q |
| |
|
|| || ||||||||||| |||| || ||||||| | | |||||||| |
|
|
| T |
5593380 |
ttgctgcaaatagtttgcagacaagagaagaataggaaacaccaacc |
5593426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 12064776 - 12064681
Alignment:
| Q |
55 |
gaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatca |
154 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||| ||||||||||||| ||||| |||| || ||| || ||||||||||||||||||||| |
|
|
| T |
12064776 |
gaaagaatgttacttattatgtcaattgtagttcgaccattggtaaatcttccggttgttccgatcg----gggagtcaattccataaggtttgtaatca |
12064681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 5582735 - 5582793
Alignment:
| Q |
39 |
ataatatagataaaccgaaagaac-gttacttattatgttaattgcagttcgaccgttg |
96 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
5582735 |
ataatatagataaattgaaagaattgttacttattatgtcaattgcagttcgaccgttg |
5582793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University