View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_24 (Length: 283)
Name: NF18176_low_24
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_24 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 31345784 - 31346057
Alignment:
| Q |
17 |
agactcttaccctccctgttttccattaagttagagttgaaagtttaactcttcttttattaaagcaacgcgtaagcattcacatgatattcgtgaagat |
116 |
Q |
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| T |
31345784 |
agactcttaccctccctgttttccattaagttagagttgaaagtttaactcatatgttattaaagcaacgcgtaagcattcacatgatattcgtgaagat |
31345883 |
T |
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| Q |
117 |
atcctttgcttgatatagaaatgctcttttctttcatacttttatgaaacannnnnnnncatcaagaggcgtttaatgcaacaattcagtttttccaaga |
216 |
Q |
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| T |
31345884 |
atcctttgcttgatatagaaatgctcttttcttttatacttttatgaaacattttttttcatcaagaggcgtttaatgcaacaattcagtttttccaaga |
31345983 |
T |
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| Q |
217 |
ttccatttccgtttcattgaagtg-------ttccaatttttcaccaagaggcatttaggatgtcaaaccttct |
283 |
Q |
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| T |
31345984 |
ttccatttccgtttcattgaagtgttgcaacttgcaatttttcaccaagaggcatttaggatgtcaaaccttct |
31346057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 283
Target Start/End: Original strand, 31356484 - 31356750
Alignment:
| Q |
23 |
ttaccctccctgttttccattaagttagagttgaaagtttaactcttcttttattaaagcaacgcgtaagcattcacatgatattcgtgaagatatcctt |
122 |
Q |
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| T |
31356484 |
ttaccctccctgttttctgttaagttagagttggaagtttaactcttcttttattaaagcaacgcgcaagcgttcacat---attcgtgaagacatcctt |
31356580 |
T |
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| Q |
123 |
tgcttgatatagaaatgctcttttctttc--------atacttttatgaaacannnnnnnnc-atcaagaggcgtttaatgcaacaattcagtttttcca |
213 |
Q |
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| T |
31356581 |
cgcttgatatagcaatgctctttttttttttatatatatattcttacgaaactttttttttccatcgagaggcgtttaatgcaacaattcagtttttcca |
31356680 |
T |
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| Q |
214 |
agattccatttccgtttcattgaagtgttccaatttttcaccaagaggcatttaggatgtcaaaccttct |
283 |
Q |
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| T |
31356681 |
agttttcatttccgtttcattgaagtgttgcaatttttcaccaagaggcatttaggatgtcaaaccttct |
31356750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 39246213 - 39246298
Alignment:
| Q |
27 |
cctccctgttttccattaagttagagttgaaagtttaactcttcttttattaaagcaacgcgtaagcattcacatgatattcgtgaa |
113 |
Q |
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| T |
39246213 |
cctccctgttttccattaagttagagttgaatgtttgactcttcttttattaaagcagcacgt-agcgttcacatgatattcgtgaa |
39246298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 44601147 - 44601188
Alignment:
| Q |
43 |
taagttagagttgaaagtttaactcttcttttattaaagcaa |
84 |
Q |
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| T |
44601147 |
taagttagaattgaatgtttgactcttcttttattaaagcaa |
44601188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 10503744 - 10503827
Alignment:
| Q |
36 |
tttccattaagttagagttgaaagtttaactcttcttttattaaagcaacgcgtaagcattcacatgatattcgtgaagatatc |
119 |
Q |
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| T |
10503744 |
tttccgttatgttagagttgaaagtttgactctttttttagtaaagcaacacgtaagcattcacatgatatttgtgaagatatc |
10503827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 42345333 - 42345230
Alignment:
| Q |
23 |
ttaccctccctgttttccattaagttagagttgaaagttt-aactcttcttttattaaagcaacgcgtaagcattcacatgatattcgtgaagatatcct |
121 |
Q |
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||||| |||||||||||| ||||||||||||| ||||||| || | ||||| || |||||||| | ||||| ||||||| ||||||||||||||||||| |
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| T |
42345333 |
ttaccttccctgttttccgttaagttagagttaaaagtttgaatttttcttgta--aaagcaacacataagcgttcacatcatattcgtgaagatatcct |
42345236 |
T |
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| Q |
122 |
ttgctt |
127 |
Q |
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| T |
42345235 |
tcgctt |
42345230 |
T |
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