View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_28 (Length: 255)
Name: NF18176_low_28
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 1091954 - 1091700
Alignment:
| Q |
1 |
gtgataacatgaccatgatcttgattcagttcaaaaatcctctgacttcagatgcttctgtcacagaccagcctgagtcatctgttcaacccactccatt |
100 |
Q |
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| T |
1091954 |
gtgataacatgaccatgatcttgattcagttcaaaaatcctctgacttcagatgcttctgtcacagaccagcctgagtcatctgttcaacccactccatt |
1091855 |
T |
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| Q |
101 |
acctccggcacaacagtctgaatctgacagaaagttagattaagtagaattgaagtgagagaatttcagactcaggcagatggtcgtcaatttctgactg |
200 |
Q |
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| T |
1091854 |
acctccggcacaacagtctgaatctgacagaaagttagattaagtagaattgaagtgagagaatttcagactcaggcagatggtcgtcaatttctgactg |
1091755 |
T |
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| Q |
201 |
catgttgaagcattagtgaggggaggtggttcatggctactatatttccagattt |
255 |
Q |
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| T |
1091754 |
catgttgaagcattagtgaggggaggtggttcatggctactatatttccagattt |
1091700 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48836066 - 48836102
Alignment:
| Q |
1 |
gtgataacatgaccatgatcttgattcagttcaaaaa |
37 |
Q |
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| T |
48836066 |
gtgataacatgaccatgatcttggtgcagttcaaaaa |
48836102 |
T |
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