View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18176_low_3 (Length: 537)
Name: NF18176_low_3
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 11639836 - 11640337
Alignment:
| Q |
19 |
ttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacatcaaagacgaactcgaacgccacaagg |
118 |
Q |
| |
|
||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11639836 |
ttggacaagctaacatggttacttcaagaggaagtaaatctacaaagaggagtccgtgaagatgttcaatacatcaaagacgaacttgaacgccacaagt |
11639935 |
T |
|
| Q |
119 |
ccatcttgatggtagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagttattgctcaagacatggaagatgctat |
218 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
11639936 |
ccatcttgatgttagctgattcattggaagacaaagaccctgaactcaaagtatgggttaaaagagtaagagatattgctcaagacatggaagatgctat |
11640035 |
T |
|
| Q |
219 |
agatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaatcttcttatcacaagattgtttttggaattaagaccatgaaagctagacgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11640036 |
agatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaatcttcttatcacaagattgtttttggaattaagaccatgaaagctagacgc |
11640135 |
T |
|
| Q |
319 |
aaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtccaatcataccttcaagctcaagtcaaaggctttcatcaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11640136 |
aaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtccaatcataccttcaagctcaagtcaaaggctttcatcaa |
11640235 |
T |
|
| Q |
419 |
gacttgatagtcaaggtaatttggaattaattttgttaataattaattatatacaatacatgctcaatgcacaaattaaaactataatcatactttagtg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11640236 |
gacttgatagtcaaggtaatttggaattaattttgttaataattaattatatacaatacatgctcaatgcacaaattaaaactataatcatactttagtg |
11640335 |
T |
|
| Q |
519 |
tg |
520 |
Q |
| |
|
|| |
|
|
| T |
11640336 |
tg |
11640337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 11621344 - 11621853
Alignment:
| Q |
18 |
gttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacatcaaagacgaactcgaacgccacaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11621344 |
gttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacatcaacgacgaactcgaacgccacaag |
11621443 |
T |
|
| Q |
118 |
gccatcttgatggtagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagttattgctcaagacatggaagatgcta |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621444 |
gccatcttgatggcagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagttattgctcaagacatggaagatgcta |
11621543 |
T |
|
| Q |
218 |
tagatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaatcttcttatcacaagattgtttttggaattaagaccatgaaagctagacg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||| |||| || |||||||||||||||||||||| |
|
|
| T |
11621544 |
tagatgaatactatcttcgccttgtcgatcatcaacaaggaaaaatcagatcttattttcacaagattcttttcggcattaagaccatgaaagctagaca |
11621643 |
T |
|
| Q |
318 |
caaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtccaatcatac---------cttcaagctcaagtcaaagg |
408 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||| |||||||||||||||||||| |
|
|
| T |
11621644 |
caaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgatgtagcttcaagctcaagtcaaagg |
11621743 |
T |
|
| Q |
409 |
ctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaattatatacaatacatgctcaatgcacaaattaaaactataatc |
507 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||| ||||||||||| || ||| ||||| |||| | |||| | ||| ||||||||| ||||||| || |
|
|
| T |
11621744 |
ttttcatcaaggcttgatagtcaaggtgatgttgaaattaattttgatagtaactaattgcatactagacatctttaatacacaaattagaactatattc |
11621843 |
T |
|
| Q |
508 |
atactttagt |
517 |
Q |
| |
|
|||||||||| |
|
|
| T |
11621844 |
atactttagt |
11621853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 33 - 466
Target Start/End: Complemental strand, 11606214 - 11605768
Alignment:
| Q |
33 |
ttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacatcaaagacgaactcgaacgccacaaggccatcttgatggta |
132 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | | | |
|
|
| T |
11606214 |
ttggttacttcaagaagaagtaattctacaaaaaggggtccgtgaagatgttcaatacatcaaagacgaactcaaacgccacaatgccatcttaacgaga |
11606115 |
T |
|
| Q |
133 |
gctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagttattgctcaagacatggaagatgctatagatgaatactatc |
232 |
Q |
| |
|
| |||| || ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
11606114 |
gatgatgcattggaagacaaagatcctgaactcaaagtatgggttaaaagggtaagagatattgctcaagatatggaagatgctatagatgaatacaatc |
11606015 |
T |
|
| Q |
233 |
ttcgccttgtcgatcatcaacaaggcaaaatcaaa---tcttcttatcacaagattgtttttggaattaagaccatgaaagctagacgcaaaattgcttc |
329 |
Q |
| |
|
|||||||||||||||||| |||||| || | |||| ||||||| ||||||| ||| ||||| || |||||||||||| |||||| || ||| ||||| |
|
|
| T |
11606014 |
ttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttcacaaggttgcttttgacatcaagaccatgaaacctagacacagaatagcttc |
11605915 |
T |
|
| Q |
330 |
aaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtccaatcatacc---------ttcaagctcaagtcaaaggctttcatcaaga |
420 |
Q |
| |
|
| |||| || |||||||||||||||||||| |||| | || |||||||||| ||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
11605914 |
agatattaaaaaaatcaaatccaaagttgaagctatcactcaaggacgtccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaagg |
11605815 |
T |
|
| Q |
421 |
cttgatagtcaaggtaat-ttggaattaattttgttaataattaatt |
466 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
11605814 |
cttgatagtcaaggtaatgttggaatttattttgataataattaatt |
11605768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 466
Target Start/End: Complemental strand, 14484668 - 14484602
Alignment:
| Q |
401 |
gtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt |
466 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||| |||||||| |||||| |||||||||||| |
|
|
| T |
14484668 |
gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaatt |
14484602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 401 - 466
Target Start/End: Original strand, 33735417 - 33735483
Alignment:
| Q |
401 |
gtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt |
466 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
33735417 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaatt |
33735483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 500
Target Start/End: Original strand, 53807338 - 53807378
Alignment:
| Q |
459 |
aattaattatatacaatacatgctcaatgcacaaattaaaac |
500 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
53807338 |
aattaattatatacaat-catgttcaatgcacaaattaaaac |
53807378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University