View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_32 (Length: 239)
Name: NF18176_low_32
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36682620 - 36682400
Alignment:
| Q |
1 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaattattgaggaggagcatgctagggataactcggattcaccgtagatcatcgttagtgtt |
100 |
Q |
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| T |
36682620 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaattattgaggaggagcatgctagggataactcggattcaccgtagatcatcgttagtgtt |
36682521 |
T |
|
| Q |
101 |
agggccatggtggaggatgggtgtccaaatagtcggacatacgaagacgttcttttgatgattcaggctgagatactccctgccaccgcatataggattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36682520 |
agggccatggtggaggatgggtgtccaaatagtcggacatacgaagacgttcttttgatgattcaggctgagatactccctgccaccgcatataggattc |
36682421 |
T |
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| Q |
201 |
caagaaggaggaggcccttta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36682420 |
caagaaggaggaggcccttta |
36682400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36693587 - 36693367
Alignment:
| Q |
1 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaattattgaggaggagcatgctagggataactcggattcaccgtagatcatcgttagtgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36693587 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaattattgaggaggagcatgctagggataactcggattcaccgtagatcatcattagtgtt |
36693488 |
T |
|
| Q |
101 |
agggccatggtggaggatgggtgtccaaatagtcggacatacgaagacgttcttttgatgattcaggctgagatactccctgccaccgcatataggattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36693487 |
agggccatggtggaggatgggtgtccaaatagtcggacatacgaagacgttcttttgatgattcaggctgagatactccctgccaccgcatataggattc |
36693388 |
T |
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| Q |
201 |
caagaaggaggaggcccttta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36693387 |
caagaaggaggaggcccttta |
36693367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 435830 - 435610
Alignment:
| Q |
1 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaattattgaggaggagcatgctagggataactcggattcaccgtagatcatcgttagtgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
435830 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaattattgaggaggagcatgctagggataactcggattcaccgtagatcatcgttagtgtt |
435731 |
T |
|
| Q |
101 |
agggccatggtggaggatgggtgtccaaatagtcggacatacgaagacgttcttttgatgattcaggctgagatactccctgccaccgcatataggattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
435730 |
agggccatggtggaggatgggtgtccaaatagtcggacatacgaagacgttcttttgatgattcaggctgagatactccctgccaccgcatataggattc |
435631 |
T |
|
| Q |
201 |
caagaaggaggaggcccttta |
221 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
435630 |
caagaaggaggaggcccttta |
435610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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