View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_34 (Length: 235)
Name: NF18176_low_34
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_34 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 6498776 - 6498569
Alignment:
| Q |
18 |
gaaatatcacacaaggagagatttggtttgtgcaggaaaaagcaacaatggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatg |
117 |
Q |
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| T |
6498776 |
gaaatatcacacaaggagagatttggtttgtgcaggaaaaagcaacaatggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatg |
6498677 |
T |
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| Q |
118 |
gtcttcatttttatctgcatctatttaagaataaggaagccaaagaaaacgtttgaaggtgattaagctgaaacattgatataccgtgacttaagtattt |
217 |
Q |
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| T |
6498676 |
gtcttcatttttatctgcatctatttaagaataaggaagccaaagaaaacgtttgaaggtgattaagctgaaacattgatataccgtgacttaagtattt |
6498577 |
T |
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| Q |
218 |
catctcac |
225 |
Q |
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| T |
6498576 |
catatcac |
6498569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 43 - 195
Target Start/End: Complemental strand, 6516469 - 6516314
Alignment:
| Q |
43 |
gtttgtgcaggaaaaagcaacaat---ggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatggtcttcatttttatctgcatct |
139 |
Q |
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| T |
6516469 |
gtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatct |
6516370 |
T |
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| Q |
140 |
atttaagaataaggaagccaaagaaaacgtttgaaggtgattaagctgaaacattg |
195 |
Q |
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| T |
6516369 |
atttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattg |
6516314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 6505576 - 6505438
Alignment:
| Q |
45 |
ttgtgcaggaaaaagcaacaatggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatggtcttcatttttatctgcatctattta |
144 |
Q |
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| T |
6505576 |
ttgtgcaggaaaaagcaacaacagtactaccataggtatcgctctaggggtaccaattgctattgttgttatggtcttcatttttatctgcatctattta |
6505477 |
T |
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| Q |
145 |
agaataaggaagccaaagaaaacgtttgaaggtgattaa |
183 |
Q |
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| T |
6505476 |
agactaagaaagccaaagaaaacgtgtgaaggtaattaa |
6505438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 6511929 - 6511796
Alignment:
| Q |
44 |
tttgtgcaggaaaaagcaacaatggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatggtcttcatttttatctgcatctattt |
143 |
Q |
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| T |
6511929 |
tttgtgcaggaaaaagcaataaaagtactactattggcattgctgtaggagtaccaattgctcttgttcttatggtcttcatttttatctgcatttatat |
6511830 |
T |
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| Q |
144 |
aagaataaggaagccaaagaaaacgtttgaaggt |
177 |
Q |
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| T |
6511829 |
aagagtgagggagccagataaaaggtttgaaggt |
6511796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 6524462 - 6524511
Alignment:
| Q |
122 |
tcatttttatctgcatctatttaagaataaggaagccaaagaaaacgttt |
171 |
Q |
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| T |
6524462 |
tcatttttatctgcatctgtttaagagtaaggaagccaaggaaaaagttt |
6524511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 7254 - 7116
Alignment:
| Q |
45 |
ttgtgcaggaaaaagcaacaatggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatggtcttcatttttatctgcatctattta |
144 |
Q |
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| T |
7254 |
ttgtgcaggaaaaagcaacaacagtactaccataggtatcgctctaggggtaccaattgctattgttgttatggtcttcatttttatctgcatctattta |
7155 |
T |
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| Q |
145 |
agaataaggaagccaaagaaaacgtttgaaggtgattaa |
183 |
Q |
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| T |
7154 |
agactaagaaagccaaagaaaacgtgtgaaggtaattaa |
7116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 13608 - 13475
Alignment:
| Q |
44 |
tttgtgcaggaaaaagcaacaatggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatggtcttcatttttatctgcatctattt |
143 |
Q |
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| T |
13608 |
tttgtgcaggaaaaagcaataaaagtactactattggcattgctgtaggagtaccaattgctcttgttcttatggtcttcatttttatctgcatttatat |
13509 |
T |
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| Q |
144 |
aagaataaggaagccaaagaaaacgtttgaaggt |
177 |
Q |
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| T |
13508 |
aagagtgagggagccagataaaaggtttgaaggt |
13475 |
T |
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