View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_37 (Length: 209)
Name: NF18176_low_37
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 3157762 - 3157636
Alignment:
| Q |
63 |
ctctcaattttaccaacattgtctttattaaatgaaaattatattaatgtcatttcatagttatcatattgttcaacaattaattttgacaaacactaca |
162 |
Q |
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| T |
3157762 |
ctctcaattttacctacattgtctttattaaaagaaaattatattaatgccatttcatagttatcatattgttcaacaattaattttgacaaacactaca |
3157663 |
T |
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| Q |
163 |
aatttaatcatctaacttatcacttat |
189 |
Q |
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| T |
3157662 |
aatttaatcatctaatttatcaattat |
3157636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 3158205 - 3158112
Alignment:
| Q |
101 |
ttatattaatgtcatttcatagttatcatattgttcaacaattaattttgacaaacactacaaatttaatcatctaacttatcacttattattta |
195 |
Q |
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| T |
3158205 |
ttatattaatgtcatt-catagttatcatattattcaacgattaattttgtccaacactacaaatttaatcatctaacttatcacttattattta |
3158112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 33890277 - 33890346
Alignment:
| Q |
115 |
tttcatagttatcatattgttcaacaattaattttgacaaacactacaaatttaatcatctaacttatca |
184 |
Q |
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| T |
33890277 |
tttcatatttataagatagttcaacagttaattttatcaaacattacaaatttaatcgactaacttatca |
33890346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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