View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18176_low_5 (Length: 516)

Name: NF18176_low_5
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18176_low_5
NF18176_low_5
[»] chr8 (8 HSPs)
chr8 (226-506)||(16400908-16401188)
chr8 (100-377)||(19785754-19786031)
chr8 (458-506)||(22465801-22465849)
chr8 (458-506)||(22669225-22669273)
chr8 (458-506)||(24651062-24651110)
chr8 (458-505)||(17293246-17293293)
chr8 (454-506)||(18160201-18160253)
chr8 (458-506)||(20376479-20376527)
[»] chr2 (6 HSPs)
chr2 (99-445)||(25534105-25534451)
chr2 (459-506)||(28705853-28705900)
chr2 (98-217)||(32441979-32442098)
chr2 (473-506)||(21125600-21125633)
chr2 (458-506)||(22746033-22746081)
chr2 (458-506)||(24809017-24809065)
[»] chr3 (11 HSPs)
chr3 (99-458)||(19577119-19577481)
chr3 (458-506)||(18126344-18126392)
chr3 (458-506)||(17249385-17249433)
chr3 (458-505)||(14970808-14970855)
chr3 (458-506)||(11186525-11186573)
chr3 (456-506)||(15655662-15655712)
chr3 (458-506)||(5199267-5199316)
chr3 (458-506)||(1059746-1059794)
chr3 (458-506)||(13145300-13145348)
chr3 (458-506)||(15839388-15839436)
chr3 (458-506)||(17013350-17013398)
[»] chr1 (7 HSPs)
chr1 (165-445)||(18829320-18829602)
chr1 (458-506)||(17716004-17716052)
chr1 (456-506)||(21869771-21869821)
chr1 (456-505)||(20871822-20871871)
chr1 (458-506)||(19164320-19164368)
chr1 (458-506)||(21210392-21210440)
chr1 (458-506)||(22650834-22650882)
[»] chr7 (8 HSPs)
chr7 (103-443)||(13250552-13250892)
chr7 (456-506)||(16157806-16157856)
chr7 (459-506)||(10652988-10653035)
chr7 (458-506)||(13125663-13125711)
chr7 (458-506)||(13662614-13662662)
chr7 (458-506)||(14142050-14142098)
chr7 (458-506)||(16314177-16314225)
chr7 (456-506)||(18434671-18434721)
[»] chr6 (7 HSPs)
chr6 (327-456)||(17884549-17884681)
chr6 (458-506)||(16882292-16882340)
chr6 (458-506)||(19956516-19956564)
chr6 (459-506)||(22811005-22811052)
chr6 (103-178)||(28586747-28586822)
chr6 (458-506)||(1656755-1656803)
chr6 (458-506)||(14064129-14064177)
[»] scaffold0863 (1 HSPs)
scaffold0863 (458-506)||(2101-2149)
[»] scaffold0594 (1 HSPs)
scaffold0594 (458-506)||(907-955)
[»] scaffold0379 (1 HSPs)
scaffold0379 (458-506)||(3412-3460)
[»] scaffold0201 (1 HSPs)
scaffold0201 (458-506)||(29446-29494)
[»] scaffold0175 (1 HSPs)
scaffold0175 (458-506)||(7830-7878)
[»] scaffold0035 (2 HSPs)
scaffold0035 (458-506)||(108454-108502)
scaffold0035 (458-506)||(116955-117003)
[»] chr4 (3 HSPs)
chr4 (458-506)||(14008739-14008787)
chr4 (458-506)||(16850171-16850219)
chr4 (459-506)||(14907677-14907724)
[»] scaffold0315 (1 HSPs)
scaffold0315 (459-506)||(4574-4621)
[»] scaffold0193 (1 HSPs)
scaffold0193 (459-506)||(10980-11027)
[»] scaffold0387 (1 HSPs)
scaffold0387 (458-506)||(13272-13320)
[»] scaffold0084 (1 HSPs)
scaffold0084 (458-506)||(44738-44786)
[»] scaffold0004 (3 HSPs)
scaffold0004 (458-506)||(4281-4329)
scaffold0004 (458-506)||(6427-6475)
scaffold0004 (458-506)||(11438-11486)
[»] chr5 (4 HSPs)
chr5 (458-502)||(21203607-21203651)
chr5 (456-506)||(20556491-20556541)
chr5 (458-506)||(13529379-13529427)
chr5 (458-506)||(23484269-23484317)
[»] scaffold0047 (1 HSPs)
scaffold0047 (459-502)||(4551-4594)
[»] scaffold0021 (1 HSPs)
scaffold0021 (459-506)||(5326-5373)
[»] scaffold0001 (2 HSPs)
scaffold0001 (457-506)||(33845-33894)
scaffold0001 (457-506)||(39152-39201)
[»] scaffold0359 (1 HSPs)
scaffold0359 (458-506)||(10173-10221)
[»] scaffold0269 (1 HSPs)
scaffold0269 (458-506)||(22971-23019)
[»] scaffold0262 (1 HSPs)
scaffold0262 (458-506)||(11028-11076)
[»] scaffold0249 (1 HSPs)
scaffold0249 (458-506)||(9624-9672)
[»] scaffold0207 (1 HSPs)
scaffold0207 (458-506)||(26587-26635)
[»] scaffold0018 (1 HSPs)
scaffold0018 (458-506)||(961-1009)
[»] scaffold0017 (1 HSPs)
scaffold0017 (458-506)||(47807-47855)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 226 - 506
Target Start/End: Complemental strand, 16401188 - 16400908
Alignment:
Q  226 gactccctaacttaatgcaagtgtcttattcgcgtaagttgaagagaaaagacatgaatgcattttccaaaagctgcaaggcaatatttcaaggacgatt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16401188 gactccctaacttaatgcaagtgtcttattcgcgtaagttgaagagaaaagacatgaatgcattttccaaaagctgcaaggcaatatttcaaggacgatt 16401089  T
Q  326 gcctctaaagaagaaggaccctggaagtttcaattctattgcgaagctgtccgtgaaacaagctcagtgtggtctgggtgaaggcataaacttgactcca 425  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16401088 acctctaaagaagaaggaccttggaagtttcaattctattgcgaagctgtccgtgaaacaagctcggtgtggtctgggtgaaggcataaacttgactcca 16400989  T
Q  426 acatggctgataggaaagcttaaaaatattctgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16400988 acatggctgataggaaagcttaaaaatattctgttgatgaaacactttcaaatgatggatgaatagtagctatgcaagaag 16400908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 377
Target Start/End: Complemental strand, 19786031 - 19785754
Alignment:
Q  100 aatcaacacttcaaacccaattcaaagagaaacataatacccaaatattcgagcctattgacgataaagattccattttaagaatcagtagacgacaaac 199  Q
    ||||||||||| || | || ||||||||||| || |||  |||||| ||||||||| |||  || |||||||||||||||||||| || | |||| |||     
T  19786031 aatcaacactttaagctcagttcaaagagaagcagaatggccaaatgttcgagcctcttgtagacaaagattccattttaagaatgagcatacgataaat 19785932  T
Q  200 tcttaatgaaagtgagaacccttgtagactccctaacttaatgcaagtgtcttattcgcgtaagttgaagagaaaagacatgaatgcattttccaaaagc 299  Q
     ||| || ||| |||||| ||| | | ||||| | |||| ||  || | || ||| | |  |||||||||||| ||||| ||  ||||||  | | ||      
T  19785931 ccttgataaaaatgagaatcctagcaaactccttgacttcatcaaaatatcatatccccaaaagttgaagagagaagacttggctgcattaactagaaat 19785832  T
Q  300 tgcaaggcaatatttcaaggacgattgcctctaaagaagaaggaccctggaagtttcaattctattgcgaagctgtcc 377  Q
    || || ||||||| ||||||||  || |||| |||||||||| |||| ||||||||||||||||||| |||| |||||    
T  19785831 tgtaatgcaatatctcaaggacagttacctcaaaagaagaagaacccaggaagtttcaattctattgggaagttgtcc 19785754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 22465801 - 22465849
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| |||||    
T  22465801 gttgatgaatcactttcagatgatggatgaatattagctatgcgagaag 22465849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 22669273 - 22669225
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||||  |||||||||||||||||||||| |||||||||||||||    
T  22669273 gttgatgaagaactttcagatgatggatgaatattagctatgcaagaag 22669225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 24651110 - 24651062
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  24651110 gttgatgaagcactttcagatgatggatggatattagctatgcaagaag 24651062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 17293246 - 17293293
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaa 505  Q
    |||||| || ||||||||||||||||||| ||| ||||||||||||||    
T  17293246 gttgataaagcactttcagatgatggatggatattagctatgcaagaa 17293293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 18160253 - 18160201
Alignment:
Q  454 ttctgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||||||| |||| || ||||||||||| ||||| || ||||||||||    
T  18160253 ttctgttgatgaagcactctctgatgatggatggatagttgcaatgcaagaag 18160201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 20376479 - 20376527
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| |||||||||||||| |||| ||| |||||||| ||||||    
T  20376479 gttgatgaagcactttcagatgattgatggatattagctatgaaagaag 20376527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 99 - 445
Target Start/End: Complemental strand, 25534451 - 25534105
Alignment:
Q  99 caatcaacacttcaaacccaattcaaagagaaacataatacccaaatattcgagcctattgacgataaagattccattttaagaatcagtagacgacaaa 198  Q
    ||||||||||||||| |||| |||||||||||  | ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25534451 caatcaacacttcaagcccagttcaaagagaagaagaataccctaatattcgagcctattgacgataaagattccattttaagaatgagtagacgacaaa 25534352  T
Q  199 ctcttaatgaaagtgagaacccttgtagactccctaacttaatgcaagtgtcttattcgcgtaagttgaagagaaaagacatgaatgcattttccaaaag 298  Q
     |||| ||||||||||||||||||| |||||||||||||| || ||  |||| ||||| |  ||| |||||||||||||||||| | |||||  || |||    
T  25534351 ttcttgatgaaagtgagaacccttgcagactccctaactttatccagttgtcgtattcccaaaagatgaagagaaaagacatgactacatttgacagaag 25534252  T
Q  299 ctgcaaggcaatatttcaaggacgattgcctctaaagaagaaggaccctggaagtttcaattctattgcgaagctgtccgtgaaacaagctcagtgtggt 398  Q
     || |||||| ||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||| ||| |||    
T  25534251 ttgtaaggcactatttcaaggacggttacctctaaagaagaagggccctggaagtttcaattctattgggaagctgtccgtaaaagaagctcggtggggt 25534152  T
Q  399 ctgggtgaaggcataaacttgactccaacatggctgataggaaagct 445  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  25534151 ctgggtgaaggcataaatttgactccaacatgactgataggaaagct 25534105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 506
Target Start/End: Original strand, 28705853 - 28705900
Alignment:
Q  459 ttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  28705853 ttgatgaaacactttcagatgatggatgtatattagctatgcaagaag 28705900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 32441979 - 32442098
Alignment:
Q  98 acaatcaacacttcaaacccaattcaaagagaaacataatacccaaatattcgagcctattgacgataaagattccattttaagaatcagtagacgacaa 197  Q
    |||| ||| |||||||||||| ||||||||||| |  ||| ||| ||| ||| ||||| |||  ||  ||||||||||||| ||||| |||||| |||||    
T  32441979 acaaccaaaacttcaaacccagttcaaagagaagctgaatgccccaatgttcaagcctcttgttgacgaagattccattttgagaatgagtagatgacaa 32442078  T
Q  198 actcttaatgaaagtgagaa 217  Q
    |  ||| | |||||||||||    
T  32442079 atccttgaagaaagtgagaa 32442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 21125600 - 21125633
Alignment:
Q  473 tcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||||||||||||| |||||||||||||||    
T  21125600 tcagatgatggatgaatattagctatgcaagaag 21125633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 22746033 - 22746081
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  22746033 gttgatgaagctctctcagatgatggatggatattagctatgcaagaag 22746081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 24809017 - 24809065
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  24809017 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 24809065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 99 - 458
Target Start/End: Original strand, 19577119 - 19577481
Alignment:
Q  99 caatcaacacttcaaacccaattcaaagagaaacataatacccaaatattcgagcctattgacgataaagattccattttaagaatcagtagacgacaaa 198  Q
    ||||||||||||||| |||| ||||||||||| || ||||||| |||||||  |||||||| ||| |||||||||||||||| ||| |||||||||||||    
T  19577119 caatcaacacttcaagcccagttcaaagagaagcagaataccccaatattcatgcctattgtcgacaaagattccattttaataatgagtagacgacaaa 19577218  T
Q  199 ctcttaatgaaagtgagaacccttgtagactccctaacttaatgcaagtgtcttattcgcgtaagttgaagagaaaagacatgaatgcattttccaaaag 298  Q
     | || || |||||||||||||||| | |||||||||||| |  ||  ||||  |||| |  ||||| |||||||||||  | | | ||||||||| |||    
T  19577219 ttattgattaaagtgagaacccttgcaaactccctaactttagccagttgtcgaattcccagaagttaaagagaaaagatctaactacattttccagaag 19577318  T
Q  299 ---ctgcaaggcaatatttcaaggacgattgcctctaaagaagaaggaccctggaagtttcaattctattgcgaagctgtccgtgaaacaagctcagtgt 395  Q
       ||| |||||||||||||||||| |||| ||| ||||||||||| ||||| |||||||||||||||||| |||| ||||| ||||  |||||  ||||    
T  19577319 aagctgtaaggcaatatttcaaggatgattacctttaaagaagaagaaccctagaagtttcaattctattgggaagttgtccatgaatgaagcttggtgt 19577418  T
Q  396 ggtctgggtgaaggcataaacttgactccaacatggctgataggaaagcttaaaaatattctg 458  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||| || | |||||||    
T  19577419 ggtctgggtgaaggaatcaacttgactccaacatggctgataggaatgctcaagagtattctg 19577481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 18126344 - 18126392
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  18126344 gttgatgaagcactttcagatgatggatgaatattagctatgcaagaag 18126392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 17249385 - 17249433
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  17249385 gttgatgaagcactttcagatgatggatggatactagctatgcaagaag 17249433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 505
Target Start/End: Complemental strand, 14970855 - 14970808
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaa 505  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  14970855 gttgatgaagcactttcagatgatggatggatattagctatgcaagaa 14970808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 11186573 - 11186525
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| || ||||||||||||    
T  11186573 gttgatgaagcactttcagatgatggatggatattatctatgcaagaag 11186525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 506
Target Start/End: Original strand, 15655662 - 15655712
Alignment:
Q  456 ctgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  15655662 ctgttgatgaagctctctcagatgatggatggatattagctatgcaagaag 15655712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 5199316 - 5199267
Alignment:
Q  458 gttgatgaaacacttt-cagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| |||||| ||||||||||||| ||| |||||||||||||||    
T  5199316 gttgatgaagcacttttcagatgatggatggatattagctatgcaagaag 5199267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 1059794 - 1059746
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  1059794 gttgatgaagctctctcagatgatggatggatattagctatgcaagaag 1059746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 13145348 - 13145300
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  13145348 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 13145300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 15839436 - 15839388
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  15839436 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 15839388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 17013398 - 17013350
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  17013398 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 17013350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 165 - 445
Target Start/End: Complemental strand, 18829602 - 18829320
Alignment:
Q  165 aaagattccattttaagaatcagt--agacgacaaactcttaatgaaagtgagaacccttgtagactccctaacttaatgcaagt-gtcttattcgcgta 261  Q
    |||| ||||||||||||||| |||  |||||| ||| |||| |||||||| | |  ||||| ||| ||||| |||| || ||||| ||| ||| | | ||    
T  18829602 aaaggttccattttaagaatgagtgtagacgaaaaattcttgatgaaagtaatagaccttgcagattccctgactttat-caagttgtcatatccccata 18829504  T
Q  262 agttgaagagaaaagacatgaatgcattttccaaaagctgcaaggcaatatttcaaggacgattgcctctaaagaagaaggaccctggaagtttcaattc 361  Q
    |||||||||||||| || ||| ||||||| ||  |||||| ||| |||||||||||||||   | ||| |||||||||||||| ||||||||||||||||    
T  18829503 agttgaagagaaaatacctgactgcatttgccggaagctgtaagacaatatttcaaggacagatacctttaaagaagaaggactctggaagtttcaattc 18829404  T
Q  362 tattgcgaagctgtccgtgaaacaagctcagtgtggtctgggtgaaggcataaacttgactccaacatggctgataggaaagct 445  Q
    ||||| ||||||||| |||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  18829403 tattgggaagctgtctgtgaaagaagctcggtgtggtctaggtgaagccataaacttgactccaacatggctgataggaaagct 18829320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 17716052 - 17716004
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  17716052 gttgaagaagcactttcagatgatggatgaatactagctatgcaagaag 17716004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 506
Target Start/End: Complemental strand, 21869821 - 21869771
Alignment:
Q  456 ctgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||| ||| | || |||||||||||||||||| |||||||||||||||    
T  21869821 ctgttgaagaagctctctcagatgatggatgaatattagctatgcaagaag 21869771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 505
Target Start/End: Original strand, 20871822 - 20871871
Alignment:
Q  456 ctgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaa 505  Q
    ||||||||||| | || |||||||||||||| ||| ||||||||||||||    
T  20871822 ctgttgatgaagctctctcagatgatggatggatattagctatgcaagaa 20871871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 19164320 - 19164368
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  19164320 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 19164368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 21210392 - 21210440
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  21210392 gttgatgaagctctctcagatgatggatggatattagctatgcaagaag 21210440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 22650882 - 22650834
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  22650882 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 22650834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 103 - 443
Target Start/End: Original strand, 13250552 - 13250892
Alignment:
Q  103 caacacttcaaacccaattcaaagagaaacataatacccaaatattcgagcctattgacgataaagattccattttaagaatcagtagacgacaaactct 202  Q
    ||||||| ||| |||| ||||||||| | || ||| ||| ||| |||| |||| ||| ||| |||||||| ||||||||||  |||| ||  |||| |||    
T  13250552 caacactacaatcccagttcaaagaggagcagaattccccaatgttcgggccttttgtcgacaaagattctattttaagaacaagtaaacatcaaattct 13250651  T
Q  203 taatgaaagtgagaacccttgtagactccctaacttaatgcaagt-gtcttattcgcgtaagttgaagagaaaagacatgaatgcattttccaaaagctg 301  Q
    | |||||||||||||||| || ||| ||||| | || || ||||| ||  ||| | |  |||||||||||||||||   || ||||||| ||   || ||    
T  13250652 tgatgaaagtgagaacccctgcagaatccctgagtttat-caagttgttgtatccccacaagttgaagagaaaagatccgattgcatttgccgggagttg 13250750  T
Q  302 caaggcaatatttcaaggacgattgcctctaaagaagaaggaccctggaagtttcaattctattgcgaagctgtccgtgaaacaagctcagtgtggtctg 401  Q
     || |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||  ||||| | ||||||| ||||||  |||||||||    
T  13250751 taaagcaatatttcaaggacaattacccctaaagaagaaggaccctggaagtttcaattctattggaaagctattcgtgaaagaagctccctgtggtctg 13250850  T
Q  402 ggtgaaggcataaacttgactccaacatggctgataggaaag 443  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  13250851 ggtgaaggcaaaaacttgactccaacatggctcataggaaag 13250892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 456 - 506
Target Start/End: Original strand, 16157806 - 16157856
Alignment:
Q  456 ctgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  16157806 ctgttgatgaagcactttcagatgatggatggattgtagctatgcaagaag 16157856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 506
Target Start/End: Complemental strand, 10653035 - 10652988
Alignment:
Q  459 ttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  10653035 ttgatgaagcactttcagatgatggatggatattagctatgcaagaag 10652988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 13125663 - 13125711
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| | |||||||||||||    
T  13125663 gttgatgaagcactttcagatgatggatggatattggctatgcaagaag 13125711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 13662662 - 13662614
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||| ||||||||||| ||| |||||||||||||||    
T  13662662 gttgatgaagcactttctgatgatggatggatattagctatgcaagaag 13662614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 14142098 - 14142050
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||| || ||||||||||||||||||| ||| |||||||||||||||    
T  14142098 gttgataaagcactttcagatgatggatggatattagctatgcaagaag 14142050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 16314177 - 16314225
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||||  |||||||||||||||||| ||| |||||||||||||||    
T  16314177 gttgatgaagtactttcagatgatggatggatattagctatgcaagaag 16314225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 506
Target Start/End: Complemental strand, 18434721 - 18434671
Alignment:
Q  456 ctgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||| ||||| || |||||||||||||| ||| |||||||||||||||    
T  18434721 ctgttgaagaaactctctcagatgatggatggatattagctatgcaagaag 18434671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 327 - 456
Target Start/End: Original strand, 17884549 - 17884681
Alignment:
Q  327 cctctaaagaagaaggaccctggaagtttcaattctattgcgaagctgtccgtgaaacaagctcagtgtggtctgggtgaaggcataaacttgact---c 423  Q
    |||| ||||||||||||||||||||||||||||||||||| |||| ||| | | ||| |||||| ||||||||| |||||||||| ||||||||||   |    
T  17884549 cctccaaagaagaaggaccctggaagtttcaattctattgggaagttgttcataaaagaagctcggtgtggtctaggtgaaggcagaaacttgactccgc 17884648  T
Q  424 caacatggctgataggaaagcttaaaaatattc 456  Q
    | |||||| |||| |||||||| |||| |||||    
T  17884649 cgacatggatgatgggaaagctcaaaagtattc 17884681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 16882340 - 16882292
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  16882340 gttgatgaaacactttcagatgatggatggatactagctatgcaagaag 16882292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 19956516 - 19956564
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  19956516 gttgatgaagcactttcagatgatggatggatattagctatgcaagaag 19956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 506
Target Start/End: Complemental strand, 22811052 - 22811005
Alignment:
Q  459 ttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||| || ||||||||||||||||||| ||| |||||||||||||||    
T  22811052 ttgattaagcactttcagatgatggatggatattagctatgcaagaag 22811005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 28586747 - 28586822
Alignment:
Q  103 caacacttcaaacccaattcaaagagaaacataatacccaaatattcgagcctattgacgataaagattccatttt 178  Q
    ||||| |||||||||| ||||||||||| || ||| ||| ||| ||||||||| |||  ||||||| |||||||||    
T  28586747 caacagttcaaacccagttcaaagagaagcagaatgccccaatgttcgagcctcttgttgataaagcttccatttt 28586822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 1656803 - 1656755
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  1656803 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 1656755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 14064129 - 14064177
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| |||| |||||||||| ||| ||| |||||||||||||||    
T  14064129 gttgatgaagcactctcagatgatgaatggatattagctatgcaagaag 14064177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 2101 - 2149
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  2101 gttgatgaagcactttcagatgatggatggatattagctatgcaagaag 2149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 907 - 955
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  907 gttgatgaagcactttcagatgatggatggatattagctatgcaagaag 955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 3460 - 3412
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  3460 gttgatgaagcactttcagatgatggatggatattagctatgcaagaag 3412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 29446 - 29494
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  29446 gttgatgaagcactttcagatgatggatggatattagctatgcaagaag 29494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 7830 - 7878
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||||||||||||||||||||||| ||| |||||||| ||||||    
T  7830 gttgatgaaacactttcagatgatggatggatattagctatgtaagaag 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 108454 - 108502
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  108454 gttgatgaagcactttcagatgatggatggatattagctatgcaagaag 108502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 116955 - 117003
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  116955 gttgatgaagcactttcagatgatggatggatattagctatgcaagaag 117003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 14008787 - 14008739
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  14008787 gttgatgaagcactttcagatgatggatggatactagctatgcaagaag 14008739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 16850219 - 16850171
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  16850219 gttgatgaagcactttcagatgatggatggatactagctatgcaagaag 16850171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 506
Target Start/End: Original strand, 14907677 - 14907724
Alignment:
Q  459 ttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  14907677 ttgatgaagcactttcagatgatggatgaatattagctatgtaagaag 14907724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 506
Target Start/End: Complemental strand, 4621 - 4574
Alignment:
Q  459 ttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  4621 ttgatgaagcactttcagatgatggatggatactagctatgcaagaag 4574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 506
Target Start/End: Complemental strand, 11027 - 10980
Alignment:
Q  459 ttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  11027 ttgatgaagcactttcagatgatggatgaatattagctatgtaagaag 10980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 13320 - 13272
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| |||| |||||||||||||| ||| |||||||||||||||    
T  13320 gttgatgaagcactctcagatgatggatggatactagctatgcaagaag 13272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 44786 - 44738
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| ||||||||||||||||||| ||| |||||||| ||||||    
T  44786 gttgatgaagcactttcagatgatggatggatattagctatgaaagaag 44738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 4329 - 4281
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||| |||| ||||||||||||||||||| ||| |||||||||||||||    
T  4329 gttggtgaagcactttcagatgatggatggatattagctatgcaagaag 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 6427 - 6475
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||| |||| ||||||||||||||||||| ||| |||||||||||||||    
T  6427 gttggtgaagcactttcagatgatggatggatattagctatgcaagaag 6475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 11486 - 11438
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||| |||| ||||||||||||||||||| ||| |||||||||||||||    
T  11486 gttggtgaagcactttcagatgatggatggatattagctatgcaagaag 11438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 21203607 - 21203651
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaa 502  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||    
T  21203607 gttgatgaagcactttcagatgatggatggatactagctatgcaa 21203651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 506
Target Start/End: Original strand, 20556491 - 20556541
Alignment:
Q  456 ctgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||| ||| | || |||||||||||||||||| |||||||||||||||    
T  20556491 ctgttgaagaagctctctcagatgatggatgaatattagctatgcaagaag 20556541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 13529427 - 13529379
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  13529427 gttgatgaagctctctcagatgatggatggatattagctatgcaagaag 13529379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 23484317 - 23484269
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  23484317 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 23484269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 502
Target Start/End: Complemental strand, 4594 - 4551
Alignment:
Q  459 ttgatgaaacactttcagatgatggatgaatagtagctatgcaa 502  Q
    |||||||| ||||||||||||||| ||||||| |||||||||||    
T  4594 ttgatgaagcactttcagatgatgaatgaatactagctatgcaa 4551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 506
Target Start/End: Original strand, 5326 - 5373
Alignment:
Q  459 ttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||  |||||||||||||||||| ||| |||||||||||||||    
T  5326 ttgatgaagtactttcagatgatggatggatattagctatgcaagaag 5373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 506
Target Start/End: Original strand, 33845 - 33894
Alignment:
Q  457 tgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||||| ||||||||||||||| ||| ||| |||| ||||||||||    
T  33845 tgttgatgaagcactttcagatgatgtatggatactagcaatgcaagaag 33894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 506
Target Start/End: Original strand, 39152 - 39201
Alignment:
Q  457 tgttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||||| ||||||||||||||| ||| ||| |||| ||||||||||    
T  39152 tgttgatgaagcactttcagatgatgtatggatactagcaatgcaagaag 39201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 10173 - 10221
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| |||||||||||| || ||| ||| |||||||||||||||    
T  10173 gttgatgaagcactttcagatgttgaatggatattagctatgcaagaag 10221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 23019 - 22971
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  23019 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 22971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 11076 - 11028
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    |||||||||  |||||| ||||||||||| ||| |||||||||||||||    
T  11076 gttgatgaagaactttccgatgatggatggatactagctatgcaagaag 11028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 9624 - 9672
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||| ||| |||||||||||||||| || ||| |||||||||||||||    
T  9624 gttgaagaagcactttcagatgatgggtggatattagctatgcaagaag 9672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 26635 - 26587
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  26635 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 26587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 961 - 1009
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  961 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 1009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 47807 - 47855
Alignment:
Q  458 gttgatgaaacactttcagatgatggatgaatagtagctatgcaagaag 506  Q
    ||||||||| | || |||||||||||||| ||| |||||||||||||||    
T  47807 gttgatgaagctctctcagatgatggatggatactagctatgcaagaag 47855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University