View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_6 (Length: 497)
Name: NF18176_low_6
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_6 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Original strand, 2632164 - 2632634
Alignment:
| Q |
20 |
acctggttctgaaagatggagttatttgaataattaactcaattcagtttcctactatcataaaatgttaagctggtctctcactttgcagaaagtttgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2632164 |
acctggttctgaaagatggagttatttgaataattaactcaattcagtttcctactatcataaaatgttaagctggtctctcactttgcagaaagtttgt |
2632263 |
T |
|
| Q |
120 |
caaattagttcatttgtcatgtatttgctcatcacttggatttcatagaccctaagtatataatttcatgaaccaagaatatgaaatttcagggacaact |
219 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2632264 |
caaattagttcatttgtcatgtttttgctcatcacttggatttcatagaccctaagtatataatttcatgaaccaagaatatgaaatttcagggacaact |
2632363 |
T |
|
| Q |
220 |
tgatactctgtatgtaactccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataaggg |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2632364 |
tgatactctgtatgtaactccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataaggg |
2632463 |
T |
|
| Q |
320 |
agcaaagcaaactggatatttactaccctgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaaactga |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2632464 |
agcaaagcaaactggatatttactaccctgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaatctga |
2632563 |
T |
|
| Q |
420 |
caacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttacacttcctttgctt |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2632564 |
caacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttacacttcctttgctt |
2632634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 7848 - 7377
Alignment:
| Q |
20 |
acctggttctgaaagatggagttatttgaataattaactcaattcagtttcctactatcataaaatgttaagctggtctctcactttgcagaaagtttgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7848 |
acctggttctgaaagatggagttatttgaataattaacttaattcagtttcctactatcataaaatgttaagctggtctctcactttgcagaaagtttgt |
7749 |
T |
|
| Q |
120 |
caaattagttcatttgtcatgtatttgctcatcacttggatttcatagaccctaagtatataatttcatgaaccaagaatatgaaatttcagggacaact |
219 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7748 |
caaattagttcatttgtcatgtttttgctcatcacttggatttcatagaccctaagtatataatttcatgaaccaagaatatgaaatttcagggacaact |
7649 |
T |
|
| Q |
220 |
tgatactctgtatgtaa-ctccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagg |
318 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7648 |
tgatactctgtatgtaaactccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagg |
7549 |
T |
|
| Q |
319 |
gagcaaagcaaactggatatttactaccctgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaaactg |
418 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7548 |
gagcaaagcaaactggatatttactaccctttctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaatctg |
7449 |
T |
|
| Q |
419 |
acaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttacacttcctttgctt |
490 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7448 |
acaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttacacttcctttgctt |
7377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 58 - 490
Target Start/End: Complemental strand, 45238287 - 45237856
Alignment:
| Q |
58 |
tcaattcagtttcctactatcataaaatgttaagctggtctctcactttgcagaaagtttgtcaaattagttcatttgtcatgtatttgctcatcacttg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
45238287 |
tcaattcagtttcctactatcataaaatgttaagctggtctctcactttgcagaaagtttgtcaaattagtccatttgtcatgtatttgctcatcgcttg |
45238188 |
T |
|
| Q |
158 |
gatttcatagaccctaagtatataatttcatgaaccaagaatatgaaatttcagggacaacttgatactctgt----atgtaactccagtgacaactaag |
253 |
Q |
| |
|
|||||||||||| | |||||| |||||||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
45238187 |
gatttcatagacaccaagtatgtaatttcatggaccaagaatacgaaatttcagggacaacttgatactcagtcagtatgtaactccagtgacaactaag |
45238088 |
T |
|
| Q |
254 |
tgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaagcaaactggatatttactaccctgtcta |
353 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
45238087 |
tgagggactgacgtgacatttcataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaa-----ctggatatttactaccctatcta |
45237993 |
T |
|
| Q |
354 |
taaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtt |
453 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45237992 |
taaccagcttgattattcattacaattacaggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtt |
45237893 |
T |
|
| Q |
454 |
tttaaaaattaaacagacacttacacttcctttgctt |
490 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
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| T |
45237892 |
tttaaaaagtaaacagacacttacacttcctttgctt |
45237856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 58 - 363
Target Start/End: Complemental strand, 7831306 - 7831000
Alignment:
| Q |
58 |
tcaattcagtttcctactatcataaaatgttaagctggtctctcactttgcagaaagtttgtcaaattagttcatttgtcatgtatttgctcatcacttg |
157 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||| |
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|
| T |
7831306 |
tcaattccgtttcccactattataaaatgttaagctggtctctcactttgcagaaagtttgtcaaattagtccatttgtcctgtatttgttcatcgcttg |
7831207 |
T |
|
| Q |
158 |
gatttcatagaccctaagtatataatttcatgaaccaag---------aatatgaaatttcagggacaacttgatactctgtatgtaactccagtgacaa |
248 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
7831206 |
gatttcatagacactaagtatgtaatttcatggaccaagtaaacactgaatatgaaatttcagggacaacttgatacgc---atgtaactccagtgacaa |
7831110 |
T |
|
| Q |
249 |
ctaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaagcaaactggatatttactaccct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||| |
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|
| T |
7831109 |
ctaagtgagggactgacgtgacattttataaaagtaggggaccaaattgatacaccctataaaaatgagg-----cagcaaattggatatttagtaccct |
7831015 |
T |
|
| Q |
349 |
gtctataaccagcct |
363 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
7831014 |
atctataactagcct |
7831000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 378 - 490
Target Start/End: Complemental strand, 7830965 - 7830853
Alignment:
| Q |
378 |
attacaggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttac |
477 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
7830965 |
attactggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaagtaaacagacacttac |
7830866 |
T |
|
| Q |
478 |
acttcctttgctt |
490 |
Q |
| |
|
||||||||||||| |
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|
| T |
7830865 |
acttcctttgctt |
7830853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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