View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_low_7 (Length: 494)
Name: NF18176_low_7
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 23 - 488
Target Start/End: Original strand, 50698196 - 50698660
Alignment:
| Q |
23 |
taataataataatgtagtgggg-tagttggg-tgtgggggcacgcggggaatgaactgtaagtaaata--taagtgtcggtgataatgatgatagattaa |
118 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
50698196 |
taataataataatgtagtgggggtagttggggtgtgggggcacgcggggaatgaactgtaagtaaaaacataagtgtcggtgataatgatgatagattaa |
50698295 |
T |
|
| Q |
119 |
tgtggaactcgatctcccagcagcagtatcatagtatagtatcagattaataaacttgaattcaaattacagaaatcaatgcaaattgtcggttgcaacg |
218 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50698296 |
tgcggaactcgatctcccagcagcagtatcata--------tcagattaataaacttgaattcaaattacagaaatcaatgcaaattgtcggttgcaacg |
50698387 |
T |
|
| Q |
219 |
cacttccatccataaacaacacaagtcaaaatcctctcacannnnnnnattcaagtga----gtgaattctacttgcactacactaagcattttgcttac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50698388 |
cacttccatccataaacaacacaagtcaaaatcctctcacatttttt-attcaagtgactgagtgaattctacttgcactacactaagcattttgcttac |
50698486 |
T |
|
| Q |
315 |
acaaaatctcttcattccacatttattcttcactagatctatccgtagatcaccgtcgaatgccgcttcacttcttctgaattcaaccgcatcggaactc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50698487 |
acaaaatctcttcattccacatttattcttcactagatctagccgtagatcaccgtcgaatgccgcttcacttcttctgaattcaaccgcatcggaactc |
50698586 |
T |
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| Q |
415 |
ctccgtgatattcacgaaatgcatattctcagtcctgttactcccggtcaggttcgttttcgatttcttctctc |
488 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50698587 |
ctccttgatattcacgaaatgcatattctcagtcctgttactcccggtcaggttcgttttcgatttcttctctc |
50698660 |
T |
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