View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18176_low_9 (Length: 466)

Name: NF18176_low_9
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18176_low_9
NF18176_low_9
[»] chr2 (13 HSPs)
chr2 (17-456)||(8379253-8379677)
chr2 (34-172)||(23783706-23783844)
chr2 (34-170)||(30394953-30395089)
chr2 (34-172)||(23768227-23768365)
chr2 (34-167)||(30424926-30425059)
chr2 (34-167)||(30437214-30437347)
chr2 (34-167)||(30430959-30431092)
chr2 (34-167)||(30475987-30476120)
chr2 (34-167)||(30384519-30384652)
chr2 (34-166)||(30483948-30484080)
chr2 (34-167)||(30469025-30469158)
chr2 (34-121)||(30403917-30404004)
chr2 (223-286)||(8192490-8192553)
[»] chr5 (9 HSPs)
chr5 (22-166)||(41627756-41627900)
chr5 (222-262)||(1827693-1827733)
chr5 (222-262)||(27498894-27498934)
chr5 (219-250)||(12647731-12647762)
chr5 (223-286)||(40330628-40330691)
chr5 (222-295)||(25343233-25343306)
chr5 (222-262)||(12317313-12317353)
chr5 (222-286)||(23270661-23270725)
chr5 (222-254)||(24158311-24158343)
[»] chr1 (7 HSPs)
chr1 (222-284)||(43770105-43770167)
chr1 (222-284)||(1138573-1138635)
chr1 (222-295)||(40802197-40802270)
chr1 (222-266)||(7946838-7946882)
chr1 (223-286)||(24216973-24217036)
chr1 (222-262)||(15059565-15059605)
chr1 (222-262)||(47091684-47091724)
[»] chr7 (4 HSPs)
chr7 (226-286)||(1469114-1469174)
chr7 (222-295)||(7262215-7262288)
chr7 (221-286)||(40332096-40332161)
chr7 (222-254)||(39145823-39145855)
[»] chr4 (5 HSPs)
chr4 (222-295)||(41621726-41621799)
chr4 (244-286)||(13017745-13017787)
chr4 (222-286)||(13771622-13771686)
chr4 (222-254)||(22625241-22625273)
chr4 (222-262)||(52983613-52983653)
[»] chr3 (4 HSPs)
chr3 (222-295)||(4252526-4252599)
chr3 (218-295)||(50731363-50731440)
chr3 (218-295)||(50781414-50781491)
chr3 (240-295)||(26535050-26535105)
[»] scaffold0160 (1 HSPs)
scaffold0160 (239-284)||(29283-29328)
[»] chr8 (4 HSPs)
chr8 (220-288)||(3794787-3794855)
chr8 (222-284)||(3403643-3403705)
chr8 (24-166)||(15852260-15852402)
chr8 (221-334)||(26168943-26169052)
[»] chr6 (1 HSPs)
chr6 (222-286)||(33499468-33499532)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 8379677 - 8379253
Alignment:
Q  17 agaatctacttcaactatgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379677 agaatctacttcaactatgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggc 8379578  T
Q  117 aacaacaaaccagactatgaaggactaaataaacttaagattgtaagtattttaatgtattagctgtatcttcttgtatttttcctataaaaattgcatc 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8379577 aacaaaaaaccagactatgaaggactaaataaacttaagattgtaagtattttaatgtattagctgtatcttcttgtatttttcctttaaaaattgcatc 8379478  T
Q  217 ttttgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgattgattcttcctgatgccaatct 316  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||    
T  8379477 ttttgaacccatttgaggttgacttagtggttggcttgaaatcttgaagtctattcatctcaaggtctcaggtttgattgattcctcctgatgccaatct 8379378  T
Q  317 tagtgggcaagtccatactctaactttaaatggggcccccacaaaagtgtggtgggattggtatgctcagattaaaaatatataaactttattggactca 416  Q
     ||||||| ||||||| |||| ||||||| |               ||| |||||||||| |  ||||||||||||||||||||||||||||||||||||    
T  8379377 cagtgggcgagtccatgctctgactttaagt---------------gtgcggtgggattgatccgctcagattaaaaatatataaactttattggactca 8379293  T
Q  417 cttattgatagcatatatcttattgtgacagctccctatg 456  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  8379292 cttattgatagcataaatctttttgtgacagctccctatg 8379253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 23783844 - 23783706
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||  | ||||| ||||     
T  23783844 tgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcaaggaaggaagtattagagatatttggcaatgaaaaacccgactt 23783745  T
Q  134 tgaaggactaaataaacttaagattgtaagtattttaat 172  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  23783744 tgatggactaaataaacttaagattgtaagtattttaat 23783706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 34 - 170
Target Start/End: Original strand, 30394953 - 30395089
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||  | ||||||||||| |||||||| |     
T  30394953 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaaacacgtgctagggaggaagtgttacatgtctttggcaacaaaaaaccagattt 30395052  T
Q  134 tgaaggactaaataaacttaagattgtaagtatttta 170  Q
    ||| || |||||||| || ||||||||||||| ||||    
T  30395053 tgatgggctaaataacctaaagattgtaagtaattta 30395089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 23768227 - 23768365
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    ||||||||||||| ||| | |||||||||||| |||| |||||||||||||||||  || ||||||||||| | |||||||||||  | ||||||||||     
T  23768227 tgcttgtttggacgatggtgttgttgagtaggcacccagattggcaagaacgtgcccggaaggaagtattagagatatttggcaatgaaaaaccagactt 23768326  T
Q  134 tgaaggactaaataaacttaagattgtaagtattttaat 172  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  23768327 tgatggactaaataaacttaagattgtaagtattttaat 23768365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 30424926 - 30425059
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||| ||||| ||||     
T  30424926 tgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtttttggcaacaataaacctgactt 30425025  T
Q  134 tgaaggactaaataaacttaagattgtaagtatt 167  Q
    ||| || |||| | | |||||||| |||||||||    
T  30425026 tgacgggctaagtcatcttaagatcgtaagtatt 30425059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 30437214 - 30437347
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    ||||||||||||||||  | |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| ||||| || |     
T  30437214 tgcttgtttggacaatagtgttgttgagtaggtaccctgattggcaagcacgtgcaagggaggaagtattacaagtatttggcaacaataaacccgattt 30437313  T
Q  134 tgaaggactaaataaacttaagattgtaagtatt 167  Q
    ||| || |||| | | ||||||||||||||||||    
T  30437314 tgatgggctaagtcatcttaagattgtaagtatt 30437347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 30430959 - 30431092
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    ||||||||||||||||| | |||||||||||||| || ||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||| |     
T  30430959 tgcttgtttggacaatggtgttgttgagtaggtaaccagattggcaagaacgtgcaagggaagaagtattacaagtatttggcaacaataaaccagaatt 30431058  T
Q  134 tgaaggactaaataaacttaagattgtaagtatt 167  Q
    ||| || |||| | | |||||||| |||||||||    
T  30431059 tgacgggctaagtcatcttaagatcgtaagtatt 30431092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 30475987 - 30476120
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||||  ||||| |||||||||||||| ||| | || ||||| || |||||||| |     
T  30475987 tgcttgtttgggcaatgatgttgttgagtaggtatcctgattggcaagctcgtgcaagggaggaagtattgcaagtcttcggcaataaaaaaccagattt 30476086  T
Q  134 tgaaggactaaataaacttaagattgtaagtatt 167  Q
    ||| ||||||||  ||||||||||||||||||||    
T  30476087 tgatggactaaaccaacttaagattgtaagtatt 30476120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 30384519 - 30384652
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||   ||||| ||||||||||| |||||  | ||||||||||  |||||||| |     
T  30384519 tgcttgtttggacaatgatattattgagtaggtaccctgattggcaaacccgtgcaagggaggaagtgttacatgtctttggcaacagaaaaccagattt 30384618  T
Q  134 tgaaggactaaataaacttaagattgtaagtatt 167  Q
    ||| || |||||||| || ||||| |||||||||    
T  30384619 tgatgggctaaataacctaaagatcgtaagtatt 30384652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 30483948 - 30484080
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    ||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||| || ||||||||  ||||| | |||||||||||  ||||||| |     
T  30483948 tgcttgtttggacaattgtattattgagtaggcaccctaattggcaagcacgtgcaagagaggaagtgctacaagtttttggcaacaaacaaccagattt 30484047  T
Q  134 tgaaggactaaataaacttaagattgtaagtat 166  Q
    ||||||||||||  | |||||||||||||||||    
T  30484048 tgaaggactaaaccatcttaagattgtaagtat 30484080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 30469025 - 30469158
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagacta 133  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||||  ||||| ||||| |||||||||||  | ||||||||||| ||||| || |     
T  30469025 tgcttgtttggacaatggtgttattgagtaggtaccccgattggcaagcgcgtgcaagggaagaagtattacaggtctttggcaacaataaacctgattt 30469124  T
Q  134 tgaaggactaaataaacttaagattgtaagtatt 167  Q
    ||| || |||| | | ||||||||||||||||||    
T  30469125 tgacgggctaagtcatcttaagattgtaagtatt 30469158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 30403917 - 30404004
Alignment:
Q  34 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaa 121  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||| |||||||| || ||| | |||||| ||||    
T  30403917 tgcttgtttggacaatgatattgttgagtagatatcctgattggcaagcacgagctagagaggaagttttgcaagtttttggcgacaa 30404004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 8192553 - 8192490
Alignment:
Q  223 acccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 286  Q
    ||||||||| ||||| ||||||||||||||||  |||||| ||| || || |||||||||||||    
T  8192553 acccatttggggttggcctagtggttggcttgggatcttggagtgtgctcctctcaaggtctca 8192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 41627900 - 41627756
Alignment:
Q  22 ctacttcaactatgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaa 121  Q
    ||||||||||| | ||||||||||||||| |||| ||||||||||||||||| ||||||| | | || |||||||||||||||||||| |||||||||||    
T  41627900 ctacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaagcaagggcaagggaggaagtattacaaatctttggcaacaa 41627801  T
Q  122 caaaccagactatgaaggactaaataaacttaagattgtaagtat 166  Q
     |||||  | | ||| || ||||||||  | ||||||||||||||    
T  41627800 aaaacctaattttgatgggctaaataacttgaagattgtaagtat 41627756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 1827733 - 1827693
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttg 262  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  1827733 aacccatttggggttgacctagtggttggcttgagatcttg 1827693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 27498934 - 27498894
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttg 262  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  27498934 aacccatttggggttgacctagtggttggcttggaatcttg 27498894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 250
Target Start/End: Original strand, 12647731 - 12647762
Alignment:
Q  219 ttgaacccatttgaggttgacctagtggttgg 250  Q
    ||||||||||||||||||||||||||||||||    
T  12647731 ttgaacccatttgaggttgacctagtggttgg 12647762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 40330628 - 40330691
Alignment:
Q  223 acccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 286  Q
    ||||||||||||||| | |||||||| |||||| |||||| ||| || || |||||||||||||    
T  40330628 acccatttgaggttggcttagtggttagcttgagatcttggagtttgctcctctcaaggtctca 40330691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 25343233 - 25343306
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 295  Q
    |||||||||| ||||| ||||||||||| |||||||||||| | | || || | ||||||||||| | ||||||    
T  25343233 aacccatttggggttggcctagtggttgacttgaaatcttggattgtgctcttttcaaggtctcaagtttgatt 25343306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 12317353 - 12317313
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttg 262  Q
    |||||||||| ||||| |||||||||||||||| |||||||    
T  12317353 aacccatttggggttggcctagtggttggcttggaatcttg 12317313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 23270725 - 23270661
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 286  Q
    |||||||||| ||||| ||||||||||||||||  |||||| ||| || |||||  |||||||||    
T  23270725 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcatccaaaggtctca 23270661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 24158343 - 24158311
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttg 254  Q
    |||||||||||||||||||||||| ||||||||    
T  24158343 aacccatttgaggttgacctagtgattggcttg 24158311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 43770167 - 43770105
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 284  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||| ||||    
T  43770167 aacccatttgtggttgatctagtggttggcttgaaatcttggagtttgttcatctcaaagtct 43770105  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 1138573 - 1138635
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 284  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||| || || |||||||||||    
T  1138573 aacccatttggggttgacctagtggttggcttgagatcttggagtgtgctcctctcaaggtct 1138635  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 40802270 - 40802197
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 295  Q
    |||||||||| ||||| | | ||||||||||||| || ||| ||| || |||||||||||||||||| ||||||    
T  40802270 aacccatttggggttggctttgtggttggcttgagatattggagtttgctcatctcaaggtctcatgtttgatt 40802197  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 7946838 - 7946882
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagt 266  Q
    |||||||||| ||| ||||||||||||||||||| ||||||||||    
T  7946838 aacccatttggggtcgacctagtggttggcttgagatcttgaagt 7946882  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 24216973 - 24217036
Alignment:
Q  223 acccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 286  Q
    ||||||||| ||||||||||||||||| ||||  |||||| ||| || || |||||||||||||    
T  24216973 acccatttggggttgacctagtggttgacttgggatcttggagtgtgctcctctcaaggtctca 24217036  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 15059605 - 15059565
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttg 262  Q
    |||||||||| ||||| |||||||||||||||| |||||||    
T  15059605 aacccatttggggttggcctagtggttggcttggaatcttg 15059565  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 47091684 - 47091724
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttg 262  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  47091684 aacccatttggggttggcctagtggttggcttgagatcttg 47091724  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 1469114 - 1469174
Alignment:
Q  226 catttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 286  Q
    |||||| ||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||    
T  1469114 catttggggttggcctagtggttgacttgaaatcttggagtttgttcatctcaaggtctca 1469174  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 7262215 - 7262288
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 295  Q
    |||| ||||||||||||| ||||||||| ||||  |||||| ||| || || ||||||||||||| | ||||||    
T  7262215 aacctatttgaggttgacttagtggttgacttgtgatcttgtagtgtgatcctctcaaggtctcaagtttgatt 7262288  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 40332096 - 40332161
Alignment:
Q  221 gaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 286  Q
    |||||||||||  ||||  ||||||||||||||||||||||| ||| || || ||| |||||||||    
T  40332096 gaacccatttggagttggtctagtggttggcttgaaatcttggagtttgctcctctaaaggtctca 40332161  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 39145855 - 39145823
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttg 254  Q
    |||||||||||||||||||||||||||| ||||    
T  39145855 aacccatttgaggttgacctagtggttgacttg 39145823  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 41621799 - 41621726
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 295  Q
    |||||||||| ||||| |||| |||||||||||| |||||| ||| || || ||||||||||||||| ||||||    
T  41621799 aacccatttggggttggcctaatggttggcttgagatcttggagtttgctcctctcaaggtctcatgtttgatt 41621726  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 13017745 - 13017787
Alignment:
Q  244 tggttggcttgaaatcttgaagtctgttcatctcaaggtctca 286  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||    
T  13017745 tggttggcttggaatcttgaagtgtgttcctctcaaggtctca 13017787  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 13771686 - 13771622
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 286  Q
    |||||||||| |||||  ||  |||||||||||  |||||||||| || ||||||||||||||||    
T  13771686 aacccatttggggttggtctgatggttggcttgggatcttgaagtttgctcatctcaaggtctca 13771622  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 22625273 - 22625241
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttg 254  Q
    |||||||||||||||| ||||||||||||||||    
T  22625273 aacccatttgaggttggcctagtggttggcttg 22625241  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 52983613 - 52983653
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttg 262  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  52983613 aacccatttggggttggcctagtggttggcttgagatcttg 52983653  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 4252599 - 4252526
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 295  Q
    |||||||||| ||||| ||||||||||||||||| |||||| ||| || || ||||||||||||| | ||||||    
T  4252599 aacccatttggggttggcctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgatt 4252526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 50731440 - 50731363
Alignment:
Q  218 tttgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 295  Q
    |||||| |||||||  || ||||||||||||| ||||| |||||||||| || || ||||||||||||| | ||||||    
T  50731440 tttgaatccatttggtgtcgacctagtggttgacttgagatcttgaagtgtgctcctctcaaggtctcaagtttgatt 50731363  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 50781414 - 50781491
Alignment:
Q  218 tttgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 295  Q
    |||||| |||||||  || ||||||||||||| ||||| |||||||||| || || ||||||||||||| | ||||||    
T  50781414 tttgaatccatttggtgtcgacctagtggttgacttgagatcttgaagtgtgctcctctcaaggtctcaagtttgatt 50781491  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 26535050 - 26535105
Alignment:
Q  240 ctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 295  Q
    |||||||||| ||||| || ||||||| ||||||||||||||| ||||| ||||||    
T  26535050 ctagtggttgacttgagattttgaagtgtgttcatctcaaggtttcatgtttgatt 26535105  T

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Target: scaffold0160 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 29328 - 29283
Alignment:
Q  239 cctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 284  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||    
T  29328 cctagtggttggcttggaatcttgaagtgtgttcctctcaaggtct 29283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 3794787 - 3794855
Alignment:
Q  220 tgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatg 288  Q
    |||| ||||||| |||||||||| ||||||||||   |||||||||| || || |||||||||||||||    
T  3794787 tgaatccatttgtggttgacctaatggttggcttaggatcttgaagtttgctcctctcaaggtctcatg 3794855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 3403705 - 3403643
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 284  Q
    |||||||||||||||| ||| | ||||||| ||| |||||| ||| || ||||||||||||||    
T  3403705 aacccatttgaggttggccttggggttggcctgagatcttggagtttgctcatctcaaggtct 3403643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 15852402 - 15852260
Alignment:
Q  24 acttcaactatgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaaca 123  Q
    ||||||| | |||| |||||||||||| | || ||  | ||||| ||||| |||||||||||||| ||| ||||||| || ||| | ||||| ||| | |    
T  15852402 acttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagttttgcaagtttttgggaaccaaa 15852303  T
Q  124 aaccagactatgaaggactaaataaacttaagattgtaagtat 166  Q
    | ||| |||  |||||||||| | ||||||| |||||| ||||    
T  15852302 atccaaacttcgaaggactaagtcaacttaaaattgtacgtat 15852260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 334
Target Start/End: Complemental strand, 26169052 - 26168943
Alignment:
Q  221 gaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgattgattcttcctgatgccaatcttagt 320  Q
    ||||||||||  ||||| |||||||||| |||||  |||||| ||| || || |||||||||||||     | ||||||| ||||||||||||| |  ||    
T  26169052 gaacccatttagggttggcctagtggtttgcttgggatcttggagtttgctcctctcaaggtctca----ggtttgattcctcctgatgccaatttcggt 26168957  T
Q  321 gggcaagtccatac 334  Q
    |||||||| |||||    
T  26168956 gggcaagttcatac 26168943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 33499468 - 33499532
Alignment:
Q  222 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 286  Q
    |||||||||| ||||| ||| ||||||||||||  |||||| ||| || || |||||||||||||    
T  33499468 aacccatttggggttggcctggtggttggcttgggatcttggagtttgctcctctcaaggtctca 33499532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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