View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_high_11 (Length: 398)
Name: NF18177_high_11
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 25589309 - 25589684
Alignment:
| Q |
18 |
aagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtgattcagatatcatacactaacatattgtggctaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589309 |
aagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtgattcagatatcatacactaacatattgtggctaa |
25589408 |
T |
|
| Q |
118 |
atttgcgattttcnnnnnnnnaatggcaacaaatttgcgaaaaattgatggtaaaggagattggtatgctggcgtagcagttgatacgttatataattgt |
217 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589409 |
atttgcaattttcttttttttaatggcaacaaatttgcgaaaaattgatggtaaaggaaattggtatgctggcgtagcagttgatacgttatataattgt |
25589508 |
T |
|
| Q |
218 |
aaaaaattcatccataaagcaatctaaatagattttctaattctgacacggaagatgagtttcttatgatttcctgattaagtgattttttactgtcctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589509 |
aaaaaattcatccataaagcaatctaaatagattttctaattctgacacggaagatgagtttcttatgatttcctgattaagtgattttttactgtcctc |
25589608 |
T |
|
| Q |
318 |
aaaattggtattagatattctcttcagattcaactgttctggtaatcctatttaatgttgttctccctttgcttct |
393 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
25589609 |
aaaattggtattagatattctcttcagattcaactcttctggtaatcctatttaatgttgttctctctttgtttct |
25589684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 25598961 - 25599336
Alignment:
| Q |
18 |
aagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtgattcagatatcatacactaacatattgtggctaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25598961 |
aagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtgattcagatatcatacactaacatattgtggctaa |
25599060 |
T |
|
| Q |
118 |
atttgcgattttcnnnnnnnnaatggcaacaaatttgcgaaaaattgatggtaaaggagattggtatgctggcgtagcagttgatacgttatataattgt |
217 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599061 |
atttgcaattttcttttttttaatggcaacaaatttgcgaaaaattgatggtaaaggaaattggtatgctggcgtagcagttgatacgttatataattgt |
25599160 |
T |
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| Q |
218 |
aaaaaattcatccataaagcaatctaaatagattttctaattctgacacggaagatgagtttcttatgatttcctgattaagtgattttttactgtcctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599161 |
aaaaaattcatccataaagcaatctaaatagattttctaattctgacacggaagatgagtttcttatgatttcctgattaagtgattttttactgtcctc |
25599260 |
T |
|
| Q |
318 |
aaaattggtattagatattctcttcagattcaactgttctggtaatcctatttaatgttgttctccctttgcttct |
393 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
25599261 |
aaaattggtattagatattctcttcagattcaactcttctggtaatcctatttaatgttgttctctctttgtttct |
25599336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 25584468 - 25584538
Alignment:
| Q |
18 |
aagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtgattca |
88 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
25584468 |
aagtacattgttcctgactataaaaatgactgggacatcgctggtggtgtcacgccattacaggtgattca |
25584538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 25584733 - 25584789
Alignment:
| Q |
326 |
tattagatattctcttcagattcaactgttctggtaatcctatttaatgttgttctc |
382 |
Q |
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|||||||||||||||||||| || ||| ||||||||||||||| ||||||||||||| |
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| T |
25584733 |
tattagatattctcttcagactcgactcttctggtaatcctatctaatgttgttctc |
25584789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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