View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_high_16 (Length: 355)
Name: NF18177_high_16
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_high_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 10426029 - 10425671
Alignment:
| Q |
1 |
cacttggtgtattatagatgaataaattaaattaaa-----gagtaatgaagtagtatttttatgtacctcaccaataaaggatttggctgcaataacac |
95 |
Q |
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| T |
10426029 |
cacttggtgtactatagatgaataaattaaattaaattaaagagtaataaagtagtatttttatgtacctcaccaataaaggatttggctgcaataacac |
10425930 |
T |
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| Q |
96 |
caagtgcagtgttcatgtggctcaaataagcaatagggctcaataaagctgctgatttcagctggttaatcaattttccttcagagaaggaagctaaagc |
195 |
Q |
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| T |
10425929 |
caagtgcagtgttcatgtggctcaaataagcaatagggctcaataaagctgctgatttcagctggttaatcaattttccttcagagaaggaagctaaagc |
10425830 |
T |
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| Q |
196 |
tatcaaagtaccctgccaaacacagccttccagtattagacaaatagaatagtgnnnnnnngggttcatttatatattgaagaaataactaaagttcaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10425829 |
tatcaaagtaccctgccaaacacagccttccagtattagacaaatagaatagtg-aaaaaagggttcatttatatattgaagaaataactaaagttcaaa |
10425731 |
T |
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| Q |
296 |
atgacaacttttatgtaaaaaagtcagtaatgcagtaccagagaatggccaacataatta |
355 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
10425730 |
ttgacaacttttatgtaaaaaagtaagtaatgcagtaccagagaatggccaacgtaatta |
10425671 |
T |
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