View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18177_high_2 (Length: 696)

Name: NF18177_high_2
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18177_high_2
NF18177_high_2
[»] chr1 (1 HSPs)
chr1 (11-679)||(44390340-44391027)


Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 11 - 679
Target Start/End: Complemental strand, 44391027 - 44390340
Alignment:
Q  11 cacagatacaaataacaatactcgttttattcaaatgtttggagaaagttgcatcgacattacatttaaagaaaactctttgtgggcgttgtcacctaac 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  44391027 cacagatacaaataacaatgctcgttttattcaaatgtttggagaaagttgtatcgacattacatttaaagaaaactctttgccggcgttgtcacctaac 44390928  T
Q  111 tagagttgtaacaaccatcgttgaagtatagggattacgaatcatacctaatgcaccttgcctttatgttgttgtagctatcgtttgatcatcgcaggaa 210  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44390927 tagagttgtaacaaccatcattgaagtatagggattacgaagcatacctaatgcaccttgcctttatgttgttgtagctatcgtttgatcatcgcaggaa 44390828  T
Q  211 gtttgttgagttggtaccgtgactagctgccaaaatagtggcattagctgaaacacaatcctctattaggggacaggtgcgatcaaggacctgaacacaa 310  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  44390827 gtttgttgagttggtaccatgactagctgccaaaatagtggcattagctgaaacacaatcctctattaggtgacaggtgtgatcaaggacctgaacacaa 44390728  T
Q  311 gattatgagacatcttgccagagcttgaggtttctatttcaatatgctccatagcacaacaacaaaat----------ctcttgtaataactgatgtaac 400  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          ||||||||||| ||||||||||    
T  44390727 gattatgagacatcttgccagagcttgaggtttctagttcaatatgctccatagcacaacaacaaaatgttgagaaagctcttgtaatagctgatgtaac 44390628  T
Q  401 aattcgaaaaatagtgtcaaccattgagttcttttcgatgaac----------ctcaaagtccattcatacgccaaacctgcacaataaaaaggacattc 490  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||| ||||||||||||||||| ||||||| |||||     
T  44390627 aattcgaaaaatagtgtcaaccattgagttcttttcgatgaacgccttatggactcaaagtccattcctacgccaaacctgcacagtaaaaagaacattt 44390528  T
Q  491 gaagcaaatacgggcaaggtccttattaaaaccatcacaacttacatagtttgtaggacattgcacctctttatccttaaatcgaacgcatgtagggagc 590  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||    
T  44390527 gaagcaaatacgggcaaggtccttattagaaccatcacaacttacatagtttgtaggacattgcacatttttatccttaagtcgaacgcatgtagggagc 44390428  T
Q  591 caaccacaacacatatgacaaattaagctcttaaccactttcaacatccaaataccacttcaaaatcacgacctccggagatgagaagt 679  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  44390427 cacccacaacacatatgacaaattaagctcttaaccactttcaacatccaaataccacttcaaaatcatga-ctccgaagatgagaagt 44390340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University