View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_high_20 (Length: 291)
Name: NF18177_high_20
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 25013380 - 25013104
Alignment:
| Q |
15 |
tgttcctatgttttttataactcatcacattgtttgtcttgcatgcctcgttgggcatgtgggagcgcagtgtgatagtactgctcattatattctttca |
114 |
Q |
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| T |
25013380 |
tgttcctattttttttataactcatcacattgtttgtcttgcatgcctcgttgggcatgtgggagcgcagtgtgatagtactgctcattatattctttca |
25013281 |
T |
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| Q |
115 |
atctagttgcaaaatatagtgatagagttctcttatcacgtggtttgtgaaatgtgatgcactttgtccaattaggactctattattcctatttgtccat |
214 |
Q |
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| T |
25013280 |
atctagttgcaaaatatagtgataaagttctcttatcacgtggtctgtgcaatgttatgcactttgtccaattaggactctattatccctatttgtccat |
25013181 |
T |
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| Q |
215 |
ttccaacatgtacattaatcatttattcatcaccacaatcaaaacaccaaaacaaagcatttcacttgaataccatt |
291 |
Q |
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| T |
25013180 |
ttccaacatgtacattaatcatttattcatcaccacaagcaaaacaccaaaacaaagcatttcacttgaataccatt |
25013104 |
T |
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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 44153242 - 44153415
Alignment:
| Q |
48 |
ttgtcttgcatgcctcgttgggcatgtgggagcgcagtgtgatag----tactgctcattatattctt-------tc--aatctagttgcaaaatatagt |
134 |
Q |
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| T |
44153242 |
ttgtcttgcattccccgttaggcatgtgggagcgcagtatgatagatagtactgctcattatattattatattcatccaaatctagttgcaaaatatagt |
44153341 |
T |
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| Q |
135 |
gatagagttctcttatcacgtggtttgtgaaatgtgatgcac-tttgtccaattaggactctattattcctatt |
207 |
Q |
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| T |
44153342 |
gttaaagttcccttgtcacgtggtgtgtgcaatgcgatgcacttttgtccaattaggactctattattcctatt |
44153415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 37389949 - 37389902
Alignment:
| Q |
240 |
ttcatcaccacaatcaaaacaccaaaacaaagcatttcacttgaatac |
287 |
Q |
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| T |
37389949 |
ttcaccaccacaaacaaaacaccaaaacagagaatttcacttgaatac |
37389902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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