View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18177_high_21 (Length: 290)
Name: NF18177_high_21
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2451135 - 2450853
Alignment:
| Q |
1 |
aactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2451135 |
aactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctca |
2451036 |
T |
|
| Q |
101 |
tcaaccttatcatatgccccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgacc |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2451035 |
tcaaccttatcatatgctccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgacc |
2450936 |
T |
|
| Q |
201 |
ttagattataagattttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
283 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450935 |
ttagattataagactttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
2450853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2440413 - 2440128
Alignment:
| Q |
1 |
aactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctca |
100 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||| | ||| |||||||||||||||||| |
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|
| T |
2440413 |
aactcctctatcaccacacagtgtatcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctca |
2440314 |
T |
|
| Q |
101 |
tcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatg |
197 |
Q |
| |
|
||||| ||||||| |||| |||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |
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|
| T |
2440313 |
tcaactttatcatcatatgctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatg |
2440214 |
T |
|
| Q |
198 |
accttagattataagattttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
283 |
Q |
| |
|
| | ||||||||||| |||||| || |||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||| |
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|
| T |
2440213 |
atcgtagattataagtttttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
2440128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2568911 - 2569196
Alignment:
| Q |
1 |
aactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| | ||| |||||||| ||||||||| |
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|
| T |
2568911 |
aactcctctatcaccacacaatgtatcataaccatcttttaagcttgatataaaatcatgagcacttgcagcctttgatgcctctataatttcactctca |
2569010 |
T |
|
| Q |
101 |
tcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatg |
197 |
Q |
| |
|
||||||||||||| | || |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||| || | |||||||| |
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|
| T |
2569011 |
tcaaccttatcatcgtaagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgttcccttaatg |
2569110 |
T |
|
| Q |
198 |
accttagattataagattttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
283 |
Q |
| |
|
||||||||||||| | ||||| || ||||||||||| |||||||||||||| | ||||||||| ||||| ||||| ||||||||| |
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|
| T |
2569111 |
accttagattatatgtctttatgtctctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataagtcctatg |
2569196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2641126 - 2641411
Alignment:
| Q |
1 |
aactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||||||||||||||| | ||| | ||||||||||||||| |
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|
| T |
2641126 |
aactcctctatcaccacacaatgtatcataaccatcttgtaagcttgatatgaaatcatgagcatttgcagcctttgatgcctgaataatctcactctca |
2641225 |
T |
|
| Q |
101 |
tcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatg |
197 |
Q |
| |
|
||||| ||||||| | || || ||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| ||| || |||||||| | |
|
|
| T |
2641226 |
tcaactttatcatcataggctccgtatgcaatattttcccttatggtaccaccaaacagtgttggttcttgacttacaagtgcaatgtgtttccttaacg |
2641325 |
T |
|
| Q |
198 |
accttagattataagattttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
283 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
2641326 |
accttagattataagactttatatcttcaccatcaattgtcactatccctttaattggatcatagaatctctcaattagtcctatg |
2641411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2623903 - 2623618
Alignment:
| Q |
1 |
aactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctca |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||| | ||| |||||||| ||||||||| |
|
|
| T |
2623903 |
aactcctctgtcaccacacaatgtgtcatatccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactctca |
2623804 |
T |
|
| Q |
101 |
tcaaccttatca---tatgccccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatg |
197 |
Q |
| |
|
||||||| |||| |||| |||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||| |
|
|
| T |
2623803 |
tcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatgtgtttccttaatg |
2623704 |
T |
|
| Q |
198 |
accttagattataagattttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
283 |
Q |
| |
|
||||||||||||||| |||||| || || |||||||| ||||||||||||| | ||||||||| || |||||||||||||||||| |
|
|
| T |
2623703 |
accttagattataagtttttatgtctctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaattagtcctatg |
2623618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 2596470 - 2596754
Alignment:
| Q |
1 |
aactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctca |
100 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
2596470 |
aactcctctatcaccacacagtgtatcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctca |
2596569 |
T |
|
| Q |
101 |
tcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatg |
197 |
Q |
| |
|
||||| ||||||| |||| |||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
2596570 |
tcaactttatcatcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatg |
2596669 |
T |
|
| Q |
198 |
accttagattataagattttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctat |
282 |
Q |
| |
|
| | ||||||||| | ||||| || ||||| ||||| |||||||||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
2596670 |
atcgtagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaattagtcctat |
2596754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2592359 - 2592074
Alignment:
| Q |
1 |
aactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctca |
100 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||| |||||||| ||||| ||| |
|
|
| T |
2592359 |
aactcctctatcaccacacagtgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactttca |
2592260 |
T |
|
| Q |
101 |
tcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatg |
197 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| || | |||||||||| |||||||||||| |||||||||||||||| ||| || ||||||| || |
|
|
| T |
2592259 |
tcaaccttatcatcatatgatccatatgcaatattttctttgatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgtttccttagtg |
2592160 |
T |
|
| Q |
198 |
accttagattataagattttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
283 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||| |||||||||||||| | ||||||||| || |||||||||||||||||| |
|
|
| T |
2592159 |
accttagattataaatttttatgtccctaccatcaattgtcactatccctttaagtggatcatagaacctctcaattagtcctatg |
2592074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2672286 - 2672571
Alignment:
| Q |
1 |
aactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctca |
100 |
Q |
| |
|
||||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||| |
|
|
| T |
2672286 |
aactcctctgtcaccacacaaagtatcataaccatcttttaagcttgatataaaatcatgagcatttgaagcctttgatgcctctataatctcactctca |
2672385 |
T |
|
| Q |
101 |
tcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatg |
197 |
Q |
| |
|
|||||| |||||| | || |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| | ||| || ||||| |||| |
|
|
| T |
2672386 |
tcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtttcctcaatg |
2672485 |
T |
|
| Q |
198 |
accttagattataagattttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
283 |
Q |
| |
|
|||| |||||||| | ||||| || ||||| ||||| |||||||||||||| | ||| ||||| ||||||||||||||||||||| |
|
|
| T |
2672486 |
acctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
2672571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 283
Target Start/End: Original strand, 17870446 - 17870610
Alignment:
| Q |
119 |
ccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagatttta |
218 |
Q |
| |
|
||||||||||| || || |||||||| ||| | ||||||||| ||||| |||||||||| || || || |||| |||| |||| ||||| ||||||| |
|
|
| T |
17870446 |
ccatatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttatatgatttta |
17870545 |
T |
|
| Q |
219 |
tatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
283 |
Q |
| |
|
| | ||||||| || ||||| | ||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
17870546 |
tgtttgtaccatctattgtcacatttccttttattggatcatagaatctctctattaatcctatg |
17870610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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