View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_high_37 (Length: 206)
Name: NF18177_high_37
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_high_37 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 48404423 - 48404218
Alignment:
| Q |
1 |
tactgatcgatattatgaattagctgccgaccttgttactgtggtaagaatccaaactacattgatgaaattgctatgttgatgaaatttttatctcttg |
100 |
Q |
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| T |
48404423 |
tactgatcgatattatgaattagctgccgaccttgttattgtggtaagaatccaaactacattgatgaaattgctatgttgatgaaatttttatctcttg |
48404324 |
T |
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| Q |
101 |
gattcttttataatgcttgagaaattttggttacgagcagtcaagaaggaaagaatattcacttcagaaaattagacagagtgcagagacgagcaggggc |
200 |
Q |
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| T |
48404323 |
gattcttttataatgcttgagaaattttggttacgagcagtcaagaaggaaagaatattcacttcagaaaattagacagagtgcagagacgagcaggggc |
48404224 |
T |
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| Q |
201 |
aagttc |
206 |
Q |
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|||||| |
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| T |
48404223 |
aagttc |
48404218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 42830826 - 42831033
Alignment:
| Q |
1 |
tactgatcgatattatgaattagctgccgaccttgttactgtggtaagaatccaaactacattgatgaaattgctatgttgatgaaatttttatctcttg |
100 |
Q |
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|||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||| |
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| T |
42830826 |
tactgaccgttattatgaattagctgccgaccttgttactacggtaagaatccaaactactttgataaaattactatgttaatgaaatttttatctcttg |
42830925 |
T |
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| Q |
101 |
gattcttttataatgcttgagaaattttggttacgagcagtcaagaaggaaagaatattcacttcagaaaattagacagagtg--cagagacgagcaggg |
198 |
Q |
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| T |
42830926 |
gattctctgataatgcttaagaaattttggttgtgagtagtcaagaaggacagaatcttcactacagaaaattagacagagtgcacagagacgagcaggg |
42831025 |
T |
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| Q |
199 |
gcaagttc |
206 |
Q |
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| T |
42831026 |
acaagttc |
42831033 |
T |
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