View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_high_9 (Length: 411)
Name: NF18177_high_9
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 44 - 411
Target Start/End: Complemental strand, 36465017 - 36464645
Alignment:
| Q |
44 |
atgtgggaaaatgaacaaaatcaaccaagcatgggagacataaattcactttgacttgtcattatggtacatttttgtagccgagaagcggaaaatataa |
143 |
Q |
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| T |
36465017 |
atgtgggaaaatgaacaaaatcaaccaggcgtgggagacataaattcactttgacttgtcattatggtacatttttgtagccgagaagcggaaaatataa |
36464918 |
T |
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| Q |
144 |
agtattctgcggttaagcttcgattgctcaattaaggaaggatatgccactactatgatgagagtagagacattcttggttaagagagtgagagttggag |
243 |
Q |
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| T |
36464917 |
agtattctgcggttaagcttcgattgctcaatta----aggatatgccactactatgatgagagtagagacattcttggttaagagagtgagagttggag |
36464822 |
T |
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| Q |
244 |
gagttagtgagagaatgtaaaagagcaacttgaggaataa---------catttttctatatatccttctacttctaattcataagtgtttggagcacct |
334 |
Q |
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| T |
36464821 |
gagttagtgagagaatgtgaaagagcaacttgaggaataatatctcaaccatttttctatatatccttctacttctaattcataagtgttttgagcacct |
36464722 |
T |
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| Q |
335 |
cgttttgaattgaattgtatgtcacagttagtaattaaaacttacaaaaaatgagaaaaattgctgctaaagcactc |
411 |
Q |
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| T |
36464721 |
cgttttgaattgaattgtatgtcacagttagtaattagaactttcaaaaaatgagaaaaattgctgctaaagcactc |
36464645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 23261813 - 23261769
Alignment:
| Q |
11 |
gaagaaaatgagaaaggtggagctgaaaaagatatgtgggaaaat |
55 |
Q |
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| T |
23261813 |
gaagcaaatgagaagcgtggagctgaagaagatatgtgggaaaat |
23261769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 56478134 - 56478178
Alignment:
| Q |
11 |
gaagaaaatgagaaaggtggagctgaaaaagatatgtgggaaaat |
55 |
Q |
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| T |
56478134 |
gaagcaaatgagaagcgtggagctgaagaagatatgtgggaaaat |
56478178 |
T |
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