View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18177_low_1 (Length: 761)
Name: NF18177_low_1
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 14 - 744
Target Start/End: Original strand, 38877738 - 38878468
Alignment:
| Q |
14 |
cataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
38877738 |
cataggtggttgcaacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatg |
38877837 |
T |
|
| Q |
114 |
taaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatcactggcatttgatttaacaattctg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38877838 |
taaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatctctggcatttgatttaacaattctg |
38877937 |
T |
|
| Q |
214 |
cccctggaatttcatcattcaaacggaccacctctttaataccaccaactccttgactcagtgcttcaggcgaaatggatgtcagctgaaaataatttag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38877938 |
cccctggaatttcatcattcaaacggaccacctctttaataccaccaactccttgactcagtgcttcaggcgaaatggatgtcagctgaaaataatttag |
38878037 |
T |
|
| Q |
314 |
attcatagaatttactatgtatcagcactcatctcttacaagtcaatgaaaaaacaaataaagatctgacacaagttttataggcctaccacgttaagca |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38878038 |
attcatagaatttactatgtatcagcactcatctcttacaagtcaaggaaaaaacaaataaagatctgacacaagttttataggcctaccacgttaagca |
38878137 |
T |
|
| Q |
414 |
ttcgctgaattgcaggattttgctcttcagaaccgagagtaggcttttgagaaacttgattttgattattgttttctttaatcaagggtgaaatcttctc |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38878138 |
ttcgctgaattgcaggattttgctcttcagaaccgagagtaggcttttgagaaacttgattttggttattgttttctttaatcaagggtgaaatcttctc |
38878237 |
T |
|
| Q |
514 |
agtgctggtgcttgccccaaattgttcagttgctgaaatccttggagcgttgatgcttgcacaagattctttgaatgcagcgtttgtctgttgttgtaca |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38878238 |
agtgctggtgcttgccccaaattgttcagttgctgaaatccttggagcgttgatgcttgcacaagattctttgaatgcaacgtttgtctgttgttgtaca |
38878337 |
T |
|
| Q |
614 |
gcattgtcggtgcctaagattgaaatacatagtaactaaatgtttgctagaagatatagaagaccatttgataatctacaaaaaagagtgaactaatggt |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38878338 |
gcattgtcggtgcctaagattgaaatacatagtaactaaatgtttgctagaagatatagaagaccatttaataatctacaaaaaagagtgaactaatggt |
38878437 |
T |
|
| Q |
714 |
tacctgttacgatcgacgattgattcataat |
744 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38878438 |
tacctgttacgatcgacgattgattcataat |
38878468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 571
Target Start/End: Original strand, 16792900 - 16793449
Alignment:
| Q |
19 |
gtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaaat |
118 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||| ||||||| | |
|
|
| T |
16792900 |
gtggttgcaaaaaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatgtaatt |
16792999 |
T |
|
| Q |
119 |
taaacactttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatcactggcatttgatttaacaattctgcccct |
218 |
Q |
| |
|
|||| ||||||||| || | | | |||||| ||| | ||||||| |||| ||||| |||| ||| ||| |||||||||||| |||||||| | || || |
|
|
| T |
16793000 |
taaatactttagtggcaagacttcgccttcgagaacaataaaggtcggtaatcctacttcacgaacaatctctggcatttgatataacaatttttcctct |
16793099 |
T |
|
| Q |
219 |
ggaatttcatcattcaaacggaccacctctttaataccaccaactccttgactcagtgcttcaggcgaaatggatgtcagctgaaaataat-ttagattc |
317 |
Q |
| |
|
|| ||||||| || ||| |||| | |||| ||| || ||| | | ||| | ||||| ||||||||| |||| || || |||||||| | | |||| |
|
|
| T |
16793100 |
ggtatttcattcttaaaatggacaatgtcttaaatttcatcaagtgttgcactaaatgctttaggcgaaatagatgccatctaaaaataatatcaaattc |
16793199 |
T |
|
| Q |
318 |
atagaatttactatgtatcagcactcatctcttacaagtcaatgaaaaaacaaataaagatctgacacaagttttataggcctaccacgttaagcattcg |
417 |
Q |
| |
|
| ||||||||||| |||||| |||||| || |||| ||| ||||| |||||||||||| | ||||||||||| ||||| ||||| |||| | ||| |
|
|
| T |
16793200 |
aaagaatttactacgtatcaacactcaacttttacgagttaatgagaaaacaaataaa-----ggcacaagttttagaggccaaccactttaatcggtcg |
16793294 |
T |
|
| Q |
418 |
ctgaattgcaggattttgctcttcagaaccgagagtaggcttttgagaaacttgattttgattattgttttctttaatcaagggtgaaatcttctcagtg |
517 |
Q |
| |
|
||| | ||||| | ||||||||| | |||| |||||||| || ||||| ||||||||||||||||| |||||||||||||||| |||||| | | |||| |
|
|
| T |
16793295 |
ctgtactgcagaactttgctctttaaaaccaagagtaggtttccgagaatcttgattttgattattggtttctttaatcaagggagaaatcctttgagtg |
16793394 |
T |
|
| Q |
518 |
ctggtgcttgcc--ccaaattgttcagttgctgaaatccttggagcgttgatgctt |
571 |
Q |
| |
|
||||| | | |||||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
16793395 |
ttggtgtgtatctaccaaatgcttcagttgctgaaat-ctttgagcgttgatgctt |
16793449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 222 - 658
Target Start/End: Original strand, 16617415 - 16617851
Alignment:
| Q |
222 |
atttcatcattcaaacggaccacctctttaataccaccaactccttgactcagtgcttcaggcgaaatggatgtcagctgaaaataattt-agattcata |
320 |
Q |
| |
|
||||| |||||||||||||| |||| || ||| |||||||| || ||| |||||||||||||| || ||||| | ||||||| ||| | |||||||| |
|
|
| T |
16617415 |
atttcgtcattcaaacggacaaccttttcaatgtcaccaactgctgcacttagtgcttcaggcgacatagatgttatctgaaaaaaatatcagattcatt |
16617514 |
T |
|
| Q |
321 |
gaatttactatgtatcagcactcatctcttacaagtcaatgaaaaaacaaataaagatctgacacaagttttataggcctaccacgttaagcattcgctg |
420 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||||||||| |||||| | | |||||| |||||||||||||||| || | || || || |
|
|
| T |
16617515 |
gaatttactatgtatcagcactcaacttttatgagtcaatgaaaaaataaataaggtgcaagcacaag-tttataggcctaccacttttatcaatctttg |
16617613 |
T |
|
| Q |
421 |
aattgcaggattttgctcttcagaaccgagagtaggcttttgagaaacttgattttgattattgttttctttaatcaagggtgaaatcttctcagtgctg |
520 |
Q |
| |
|
||| ||||| | ||||||||||||| |||||||| || |||||| ||||||||||||||||| |||||| |||||||||||||| ||| |||| || |
|
|
| T |
16617614 |
catttcaggacatagctcttcagaaccaagagtaggtttctgagaatcttgattttgattattgctttcttctttcaagggtgaaatcctctgagtgttg |
16617713 |
T |
|
| Q |
521 |
gtgcttgccccaaattgttcagttgctgaaatccttggagcgttgatgcttgcacaagattctttgaatgcagcgtttgtctgttgttgtacagcattgt |
620 |
Q |
| |
|
| | | |||||| ||||||| |||| ||||||||||||||| ||||| ||| | || ||| |||| | |||||||| |||| |||||||||| |
|
|
| T |
16617714 |
gcgtgtttaccaaatgcttcagtttctgagatccttggagcgttgttgcttacaccaaatccttgcaatgaaatgtttgtcttctgttctacagcattgc |
16617813 |
T |
|
| Q |
621 |
cggtgcctaagattgaaatacatagtaactaaatgttt |
658 |
Q |
| |
|
||| ||||||||||||||| |||| || ||||||||| |
|
|
| T |
16617814 |
cgggacctaagattgaaatatatagcaaataaatgttt |
16617851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 16617254 - 16617415
Alignment:
| Q |
7 |
ggagtagcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaata |
106 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| || |||||||| |
|
|
| T |
16617254 |
ggagtatcaaaggtggttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaata |
16617353 |
T |
|
| Q |
107 |
tgaaatgtaaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggta |
168 |
Q |
| |
|
| |||||||| | |||||||| |||| | || ||||||| ||| ||||||||||||||| |
|
|
| T |
16617354 |
tcaaatgtaattgaaacacttcagtggtgagaccccaccttccggactagtaaaggttggta |
16617415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 274 - 658
Target Start/End: Original strand, 16638672 - 16639060
Alignment:
| Q |
274 |
gtgcttcaggcgaaatggatgtcagctgaaaataattt--agattcatagaatttactatgtatcagcactcatctcttacaagtcaatgaaaaaacaaa |
371 |
Q |
| |
|
|||||| ||| ||||| ||||||| ||||||| || | |||||||| |||||||||||||||||||||||| || |||| ||||||||| |||| || |
|
|
| T |
16638672 |
gtgcttgaggtgaaatagatgtcatctgaaaaaaaatatcagattcattgaatttactatgtatcagcactcaacttttacgagtcaatgacaaaatcaa |
16638771 |
T |
|
| Q |
372 |
taaagatctgacacaagt-tttataggcctaccacgttaagcattcgctgaattgcaggattttgctcttcagaaccgagagtaggcttttgagaaactt |
470 |
Q |
| |
|
||| | | || || |||||||||||||| | |||| || ||| || ||| ||||| || |||||||||||||||||||||| || |||||||||| |
|
|
| T |
16638772 |
taaggggaaggcataatagtttataggcctaccgctttaatcaatcgttgcatttcaggacttagctcttcagaaccgagagtaggtttctgagaaactt |
16638871 |
T |
|
| Q |
471 |
gattttgattattgttttctttaatcaagggtgaaatcttctcagtgctggtgcttgccccaaattgttcagttgctgaaatccttggagcgttgatgct |
570 |
Q |
| |
|
|||| ||||||||| |||||| ||||| ||||||||| ||| |||| ||||| | |||||| ||||||| |||| ||||||||||| ||| |||| |
|
|
| T |
16638872 |
gattatgattattgatttcttctatcaatggtgaaatcctctgagtgttggtgtgtttaccaaatgcttcagtttctgagatccttggagcattgttgct |
16638971 |
T |
|
| Q |
571 |
tgcacaagattctttgaatgcagcgtttgtctgttgttgtacagcattgtcggtgcctaagattgaaatacata-gtaactaaatgttt |
658 |
Q |
| |
|
| ||| | | ||| || || ||||||||| |||| |||||||||| ||| ||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
16638972 |
tacaccaattccttggagtgatatgtttgtctgctgttctacagcattgccgggacctaagattgaaatatatacgtaaataaatgttt |
16639060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 312 - 658
Target Start/End: Original strand, 16629832 - 16630180
Alignment:
| Q |
312 |
agattcatagaatttactatgtatcagcactcatctcttacaagtcaatgaaaaaacaaataaagatctgacacaagt-tttataggcctaccacgttaa |
410 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || |||| ||| || | |||| |||||| || | | || || |||||||||| ||| | |||| |
|
|
| T |
16629832 |
agattcattgaatttactatgtatcagcactcaacttttacgagttgattacaaaataaataaggagcaggcataaaagtttataggccaaccgctttaa |
16629931 |
T |
|
| Q |
411 |
gcattcgctgaattgcaggattttgctcttcagaaccgagagtaggcttttgagaaacttgattttgattattgttttctttaatcaagggtgaaatctt |
510 |
Q |
| |
|
|| ||| || ||| |||| ||||||||||||||||||||||||| || ||| |||||||||| ||||||||| |||||| ||||| |||||||| | |
|
|
| T |
16629932 |
tcaatcgttgcatttgaggactttgctcttcagaaccgagagtaggtttctgacaaacttgattatgattattgctttcttctatcaatggtgaaattct |
16630031 |
T |
|
| Q |
511 |
ctcagtgctggtgcttgccccaaattgttcagttgctgaaatccttggagcgttgatgcttgcacaagattctttgaatgcagcgtttgtctgttgttgt |
610 |
Q |
| |
|
|| |||| ||||| ||| |||||| ||||||| |||| ||||||||||||||| ||||| ||| | | ||| || || ||||||||| |||| | |
|
|
| T |
16630032 |
ctgagtgttggtgtgtgcaccaaatgcttcagtttctgagatccttggagcgttgttgcttacaccaattccttggagtgatatgtttgtctgctgttct |
16630131 |
T |
|
| Q |
611 |
acagcattgtcggtgcctaagattgaaatacata-gtaactaaatgttt |
658 |
Q |
| |
|
||||||||| ||| ||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
16630132 |
acagcattgccgggacctaagattgaaatatatacgtaaataaatgttt |
16630180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 16790986 - 16791147
Alignment:
| Q |
17 |
aggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaa |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| | |||| ||| ||||||| |||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
16790986 |
aggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaatgtaa |
16791085 |
T |
|
| Q |
117 |
attaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttc |
178 |
Q |
| |
|
||||| ||||||||| || | | ||||||| ||| | ||||||| ||||||||||||| |
|
|
| T |
16791086 |
tttaaatactttagtggcaagacttcaccttcaagaacaataaaggtcagtagtcctagttc |
16791147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 16629578 - 16629739
Alignment:
| Q |
7 |
ggagtagcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaata |
106 |
Q |
| |
|
|||||| || ||||||||| | ||||| | || |||||||||||||||||||| |||||||| ||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
16629578 |
ggagtatcaaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaata |
16629677 |
T |
|
| Q |
107 |
tgaaatgtaaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggta |
168 |
Q |
| |
|
| |||| || | ||||||||||||| | | | ||||||||||| || |||||||||||| |
|
|
| T |
16629678 |
tcaaatttagttcaaacactttagtggcgagactccaccttcgggactaataaaggttggta |
16629739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 16638459 - 16638620
Alignment:
| Q |
7 |
ggagtagcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaata |
106 |
Q |
| |
|
|||||| || ||||||||| | ||||| | || |||||||||||||||||||| |||||||| ||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
16638459 |
ggagtatcaaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaata |
16638558 |
T |
|
| Q |
107 |
tgaaatgtaaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggta |
168 |
Q |
| |
|
| |||| || | ||||||||||||| | | | ||||||||||| || |||||||||||| |
|
|
| T |
16638559 |
tcaaatttagttcaaacactttagtggcgagactccaccttcgggactaataaaggttggta |
16638620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 16628961 - 16629085
Alignment:
| Q |
7 |
ggagtagcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatctt-gctgatgaacatgcatcaat |
105 |
Q |
| |
|
|||||| || ||| ||||||| ||||| | || |||||||||||||||||||| |||||||| ||||||| |||||| | ||||||| ||| |||||| |
|
|
| T |
16628961 |
ggagtatcaaagggggttgcatcaaagacgcgacgcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaat |
16629060 |
T |
|
| Q |
106 |
atgaaatgtaaattaaacactttag |
130 |
Q |
| |
|
|| ||||||| | ||||||||||| |
|
|
| T |
16629061 |
atcaaatgtagttcaaacactttag |
16629085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 16637842 - 16637966
Alignment:
| Q |
7 |
ggagtagcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatctt-gctgatgaacatgcatcaat |
105 |
Q |
| |
|
|||||| || ||| ||||||| ||||| | || |||||||||||||||||||| |||||||| ||||||| |||||| | ||||||| ||| |||||| |
|
|
| T |
16637842 |
ggagtatcaaagggggttgcatcaaagacgcgacgcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaat |
16637941 |
T |
|
| Q |
106 |
atgaaatgtaaattaaacactttag |
130 |
Q |
| |
|
|| ||||||| | ||||||||||| |
|
|
| T |
16637942 |
atcaaatgtagttcaaacactttag |
16637966 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 16629304 - 16629378
Alignment:
| Q |
41 |
gcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgta |
115 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||||||| |||||||| || ||| |||||||||||| ||||||| |
|
|
| T |
16629304 |
gcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatgta |
16629378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 16638185 - 16638259
Alignment:
| Q |
41 |
gcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgta |
115 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||||||| |||||||| || ||| |||||||||||| ||||||| |
|
|
| T |
16638185 |
gcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatgta |
16638259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 15110449 - 15110407
Alignment:
| Q |
17 |
aggtggttgcaacaaagctgtgaggcattttccatcctgtggg |
59 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
15110449 |
aggtggttgcaacaaagctgcgatgcattttccatcctgtggg |
15110407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 523
Target Start/End: Complemental strand, 15110348 - 15110262
Alignment:
| Q |
435 |
gctcttcagaaccgagagtaggcttttgagaaacttgattttgattattgttttctttaatcaagggtgaaatcttctcagtgctggtg |
523 |
Q |
| |
|
|||||||||||||||| |||| || |||||| ||||||| ||||||||| ||| || |||||||||||||| ||| |||| ||||| |
|
|
| T |
15110348 |
gctcttcagaaccgag--taggtttctgagaatcttgattctgattattgctttgttctttcaagggtgaaatcctctgagtgttggtg |
15110262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 93 - 336
Target Start/End: Original strand, 21459032 - 21459278
Alignment:
| Q |
93 |
aacatgcatcaatatgaaatgtaaattaaacactttagtgac-ag-gtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatcac |
190 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| |||| | || | || ||||||| |||||| ||||| ||||||| |||||||||| ||| | |
|
|
| T |
21459032 |
aacatgcaacaatatgaaatgaaaattaaacacttcagtggcgagagaccgcaccttccggaataataaagtctggtagtactagttcatccgacatttc |
21459131 |
T |
|
| Q |
191 |
tggcatttgatttaacaattctgcccctggaatttcatcattcaaacggaccacctctttaataccaccaactccttgactcagtgcttcaggcgaaatg |
290 |
Q |
| |
|
||| | || ||| ||||||| |||| |||| | | ||| |||||| | ||||||||||||||| || |||| || ||||| ||||||| |||||| |
|
|
| T |
21459132 |
tggtagttcattaaacaattttgcctctggtaatgcatatttcaaatgaaccacctctttaatatcagcaacagctgcactcaaaacttcaggagaaatg |
21459231 |
T |
|
| Q |
291 |
gatgtcagctgaaaataat-ttagattcatagaatttactatgtatc |
336 |
Q |
| |
|
||||| ||||||||||||| | ||| ||||||| ||||||| ||||| |
|
|
| T |
21459232 |
gatgtaagctgaaaataatatcagaatcatagagtttactacgtatc |
21459278 |
T |
|
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