View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18177_low_11 (Length: 403)

Name: NF18177_low_11
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18177_low_11
NF18177_low_11
[»] chr2 (8 HSPs)
chr2 (19-158)||(2596010-2596149)
chr2 (19-158)||(2588935-2589074)
chr2 (19-155)||(2576888-2577024)
chr2 (19-155)||(2581324-2581460)
chr2 (188-287)||(2595845-2595944)
chr2 (188-279)||(2576728-2576819)
chr2 (188-238)||(2581205-2581255)
chr2 (188-238)||(2588819-2588869)
[»] chr7 (1 HSPs)
chr7 (21-158)||(46769374-46769511)
[»] chr8 (2 HSPs)
chr8 (19-158)||(29157051-29157190)
chr8 (188-284)||(29156889-29156985)
[»] chr6 (2 HSPs)
chr6 (20-158)||(30399126-30399264)
chr6 (188-287)||(30398962-30399061)
[»] chr3 (3 HSPs)
chr3 (20-158)||(21620941-21621079)
chr3 (20-158)||(21642611-21642749)
chr3 (188-253)||(21621145-21621210)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 2596149 - 2596010
Alignment:
Q  19 agaaaggtgcaatgacaacaattgacaattttccaagtcagcaaaatcatgaaatttagtccgaagattttggtaactaattttaagtagttgagtccac 118  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||     
T  2596149 agaaaggtgcaatggcaacaattgacaatttttcaagtcagcaaaatcatgaaatctagtccgaagattttggtaactaattttaaggagttgagtccat 2596050  T
Q  119 agctgttcaactcccattattttcatctgccatataatga 158  Q
     ||| ||||||||| || || |||||||||||||||||||    
T  2596049 ggctcttcaactccaataatcttcatctgccatataatga 2596010  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 2589074 - 2588935
Alignment:
Q  19 agaaaggtgcaatgacaacaattgacaattttccaagtcagcaaaatcatgaaatttagtccgaagattttggtaactaattttaagtagttgagtccac 118  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||     
T  2589074 agaaaggtgcaatggcaacaattgacaattttccaagtcatcaaaatcatgaaatctagttcgaagattttggtagctaattttaaggagttgagtccat 2588975  T
Q  119 agctgttcaactcccattattttcatctgccatataatga 158  Q
     ||| ||||||||| || || ||||||||||||| |||||    
T  2588974 ggctcttcaactccaatgatcttcatctgccatacaatga 2588935  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 2577024 - 2576888
Alignment:
Q  19 agaaaggtgcaatgacaacaattgacaattttccaagtcagcaaaatcatgaaatttagtccgaagattttggtaactaattttaagtagttgagtccac 118  Q
    |||||||||||||| |||||| ||| |||||| ||||||||||||||||||| || | ||| ||||||||||||||||||||||||| |||||||||||     
T  2577024 agaaaggtgcaatggcaacaactgaaaatttttcaagtcagcaaaatcatgatatcttgtctgaagattttggtaactaattttaaggagttgagtccat 2576925  T
Q  119 agctgttcaactcccattattttcatctgccatataa 155  Q
     ||| ||||||||| || || ||||||||||||||||    
T  2576924 ggctcttcaactccaatgatcttcatctgccatataa 2576888  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 2581460 - 2581324
Alignment:
Q  19 agaaaggtgcaatgacaacaattgacaattttccaagtcagcaaaatcatgaaatttagtccgaagattttggtaactaattttaagtagttgagtccac 118  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||| ||||| || |||| |||||| ||||||||||||||||||| |||||||||||     
T  2581460 agaaaggtgcaaaggcaacaattgacaattttccaagtcatcaaaagcatgatatctagttcgaagaatttggtaactaattttaaggagttgagtccat 2581361  T
Q  119 agctgttcaactcccattattttcatctgccatataa 155  Q
      ||  |||||||| || || ||||||||||||||||    
T  2581360 gactcgtcaactccaatgatcttcatctgccatataa 2581324  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 2595944 - 2595845
Alignment:
Q  188 ttaacagatgacatttcatcaaaagcaccgggaggcaacaactgcttgtataactccgtttccatatcaagcgaaacaatgacgaattcctttgccttaa 287  Q
    |||| ||||||||||||||||||| ||  |||||||| ||||||| ||||  |||||||| |||||| ||| ||||||||||| |||||||| |||||||    
T  2595944 ttaatagatgacatttcatcaaaaccagagggaggcatcaactgcgtgtacgactccgttcccatataaagtgaaacaatgacaaattccttagccttaa 2595845  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 2576819 - 2576728
Alignment:
Q  188 ttaacagatgacatttcatcaaaagcaccgggaggcaacaactgcttgtataactccgtttccatatcaagcgaaacaatgacgaattcctt 279  Q
    |||||||||||| ||||||||||| ||  |||||||| ||||||  |||   |||  ||| |||||||||| ||||||||||| ||||||||    
T  2576819 ttaacagatgacgtttcatcaaaaccagagggaggcatcaactgtgtgtgcgactttgttcccatatcaagtgaaacaatgacaaattcctt 2576728  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 2581255 - 2581205
Alignment:
Q  188 ttaacagatgacatttcatcaaaagcaccgggaggcaacaactgcttgtat 238  Q
    |||||||||||||||||||||||| |||  ||||||| ||||||| |||||    
T  2581255 ttaacagatgacatttcatcaaaaccacatggaggcatcaactgcgtgtat 2581205  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 2588869 - 2588819
Alignment:
Q  188 ttaacagatgacatttcatcaaaagcaccgggaggcaacaactgcttgtat 238  Q
    |||||| ||||||||||||||||| ||| |||||||| ||||||| |||||    
T  2588869 ttaacatatgacatttcatcaaaaccacagggaggcatcaactgcgtgtat 2588819  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 46769511 - 46769374
Alignment:
Q  21 aaaggtgcaatgacaacaattgacaattttccaagtcagcaaaatcatgaaatttagtccgaagattttggtaactaattttaagtagttgagtccacag 120  Q
    |||||||||||| | |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||  |    
T  46769511 aaaggtgcaatggcgacaactgacaatattccaagtcagcaaaatcatgaaatctagtccgaagattttggtaactaattttaagaagttgagtccaagg 46769412  T
Q  121 ctgttcaactcccattattttcatctgccatataatga 158  Q
    || ||||||||| | ||||||||||||||| |||||||    
T  46769411 ctcttcaactccgaatattttcatctgccacataatga 46769374  T

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Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 29157190 - 29157051
Alignment:
Q  19 agaaaggtgcaatgacaacaattgacaattttccaagtcagcaaaatcatgaaatttagtccgaagattttggtaactaattttaagtagttgagtccac 118  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||| ||||||||||||||||||| |||||||||||     
T  29157190 agaaaggtgcaatggcaacaattgacaatttttcaagtcagcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccat 29157091  T
Q  119 agctgttcaactcccattattttcatctgccatataatga 158  Q
     ||| ||||||||| | | ||| |||||||||||||||||    
T  29157090 ggctcttcaactccaaatgtttccatctgccatataatga 29157051  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 29156985 - 29156889
Alignment:
Q  188 ttaacagatgacatttcatcaaaagcaccgggaggcaacaactgcttgtataactccgtttccatatcaagcgaaacaatgacgaattcctttgcct 284  Q
    |||| ||||||||||||||||||||||| ||||| || ||||||  ||||| |||| ||||||| |||||| ||||||||||| |||||||| ||||    
T  29156985 ttaatagatgacatttcatcaaaagcacagggagacatcaactgtgtgtatgactctgtttccacatcaagtgaaacaatgacaaattccttagcct 29156889  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 30399264 - 30399126
Alignment:
Q  20 gaaaggtgcaatgacaacaattgacaattttccaagtcagcaaaatcatgaaatttagtccgaagattttggtaactaattttaagtagttgagtccaca 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||| ||||||||||||     
T  30399264 gaaaggtgcaatggcaacaattgacaattttccaagtcagcaaaatcatgatatctagtccgaagattttggcagctaattttaaggagttgagtccacg 30399165  T
Q  120 gctgttcaactcccattattttcatctgccatataatga 158  Q
    ||| ||||||||  | | ||||||||| |||||||||||    
T  30399164 gctcttcaactctaaatgttttcatcttccatataatga 30399126  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 30399061 - 30398962
Alignment:
Q  188 ttaacagatgacatttcatcaaaagcaccgggaggcaacaactgcttgtataactccgtttccatatcaagcgaaacaatgacgaattcctttgccttaa 287  Q
    |||| ||||||||||||||||||| ||  |||||||| ||  ||| |||| ||||| ||| |||||||||| ||||||||||| |||||||| |||||||    
T  30399061 ttaatagatgacatttcatcaaaaccagagggaggcatcatttgcatgtacaactctgttcccatatcaagtgaaacaatgacaaattccttagccttaa 30398962  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 21620941 - 21621079
Alignment:
Q  20 gaaaggtgcaatgacaacaattgacaattttccaagtcagcaaaatcatgaaatttagtccgaagattttggtaactaattttaagtagttgagtccaca 119  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| |||| |||||||     
T  21620941 gaaaggtgcaatggcaacaattgacatttttccaagtcagcaaaatcatgatatctagtccgaagattttggtagctaattttaaggagttaagtccacg 21621040  T
Q  120 gctgttcaactcccattattttcatctgccatataatga 158  Q
     || ||||||||| | | ||||||||| |||||||||||    
T  21621041 cctcttcaactccaaatgttttcatcttccatataatga 21621079  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 21642611 - 21642749
Alignment:
Q  20 gaaaggtgcaatgacaacaattgacaattttccaagtcagcaaaatcatgaaatttagtccgaagattttggtaactaattttaagtagttgagtccaca 119  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| |||| |||||||     
T  21642611 gaaaggtgcaatggcaacaattgacatttttccaagtcagcaaaatcatgatatctagtccgaagattttggtagctaattttaaggagttaagtccacg 21642710  T
Q  120 gctgttcaactcccattattttcatctgccatataatga 158  Q
    ||| || |||||| | | ||||||||| |||||||||||    
T  21642711 gctctttaactccaaatgttttcatcttccatataatga 21642749  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 21621145 - 21621210
Alignment:
Q  188 ttaacagatgacatttcatcaaaagcaccgggaggcaacaactgcttgtataactccgtttccata 253  Q
    |||| ||||||||||||||||||| ||  |||||||| ||||||| |||| ||||| ||| |||||    
T  21621145 ttaatagatgacatttcatcaaaaccagagggaggcatcaactgcgtgtacaactctgttcccata 21621210  T

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