View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_13 (Length: 384)
Name: NF18177_low_13
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 36184478 - 36184112
Alignment:
| Q |
1 |
cagataataataactgtcatgatagtctattattgtatatagtgtcaaatctaatgacactttgtttgtttcttgttagttacacttgaatacaccttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184478 |
cagataataataactgtcatgatagtctattattgtatatagtgtcaaatctaatgacactttgtttgtttcttgttagttacacttgaatacaccttga |
36184379 |
T |
|
| Q |
101 |
gctatggtaagatttcacttgtttcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184378 |
gctatggtaagatttcacttgtttcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaact |
36184279 |
T |
|
| Q |
201 |
atgtttggtatggttggttctgttaacatgtcacttttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184278 |
atgtttggtatggttggttctgttaacatgtcacttttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaa |
36184179 |
T |
|
| Q |
301 |
ttaacttggagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgt |
367 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184178 |
ttaactttgagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgt |
36184112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 103 - 367
Target Start/End: Complemental strand, 36196637 - 36196375
Alignment:
| Q |
103 |
tatggtaagatttcacttgtttcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactat |
202 |
Q |
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| T |
36196637 |
tatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactat |
36196538 |
T |
|
| Q |
203 |
gtttggtatggttggttctgttaacatgtcacttttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaatt |
302 |
Q |
| |
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|||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| || | |||||| |||| || ||| |
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| T |
36196537 |
gtttggaatggttgcttctgttaacaagtcacttttgctaaatagtatagcatattgtagctgttttattttcaaattttaatttagattttttaatatt |
36196438 |
T |
|
| Q |
303 |
aacttggagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgt |
367 |
Q |
| |
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| T |
36196437 |
aacttggagtgcaaggctatg-ctttgacctgataaataattgtat-aattgtaaaggcttttgt |
36196375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 103 - 350
Target Start/End: Complemental strand, 36209761 - 36209514
Alignment:
| Q |
103 |
tatggtaagatttcacttgtttcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactat |
202 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||| ||||| | |||||||| |||| |||||||||||||| |
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| T |
36209761 |
tatggtaagatttcccttgtttcttgcagtaatttcctctgtggttctttaaagggagggaagaattcaccttcctctctaataagatggtttgaactat |
36209662 |
T |
|
| Q |
203 |
gtttggtatggttggttctgttaacatgtcact-tttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||||||| || |
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| T |
36209661 |
gtttggtatggttggttctgttaacaagtcattgtttgctaaatagtataacatattgtagctgttttattttcaaagtttaatttagatttttgaatat |
36209562 |
T |
|
| Q |
302 |
taacttggagtgtaaggctatgtttttgaccggataaataattgtataa |
350 |
Q |
| |
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|||||||||||| ||||||||| ||||||| ||||||||||||||||| |
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|
| T |
36209561 |
taacttggagtgcaaggctatg-ctttgacctgataaataattgtataa |
36209514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 103 - 350
Target Start/End: Complemental strand, 36188319 - 36188070
Alignment:
| Q |
103 |
tatggtaagatttcacttgtttcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactat |
202 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||| || ||||| |||||||| ||||||| | |||||||| |||||||||||||||||| |
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| T |
36188319 |
tatggtaagatttccctt-tttcttgcagtaatttcctctgtggctctttaaagggaggggggaattcaccttcctctctaataaaatggtttgaactag |
36188221 |
T |
|
| Q |
203 |
gtttggtatggttggttctgtt---aacatgtcact-tttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaa |
298 |
Q |
| |
|
||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |
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| T |
36188220 |
gtttggtatggtttgttctgttgttaacaagtcatggtttgctaaatagtataacatattgtaactgtttaattttcaaagtttaatttagaattttgaa |
36188121 |
T |
|
| Q |
299 |
aattaacttggagtgtaaggctatgtttttgaccggataaataattgtataa |
350 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
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|
| T |
36188120 |
tattaacttggagtgcaaggctatg-gtttgacctgataaataattgtataa |
36188070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 317
Target Start/End: Complemental strand, 36200545 - 36200331
Alignment:
| Q |
105 |
tggtaagatttcacttgtttcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactatgt |
204 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||| || ||||| ||| ||| |||||| | |||||||| || ||||| ||||||||| || |
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| T |
36200545 |
tggtaagatttctcttgtttcttgcattattttcctatgtggttcagaaaagagagagaggaattcactttcctctttgacaaaatagtttgaactcggt |
36200446 |
T |
|
| Q |
205 |
ttggtatggttggttctgttaacatgtcact-tttgctaaatagtataacatattgtaactgttttattttcaaag-ttaagtttagaattttgaaaatt |
302 |
Q |
| |
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||||||||||| |||||||||||| ||| | |||||||||| | ||| |||||||| ||||||| ||||||||| || | |||||||||||| | ||| |
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| T |
36200445 |
ttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcattttagaattttggatatt |
36200346 |
T |
|
| Q |
303 |
aacttggagtgtaag |
317 |
Q |
| |
|
|| |||||||||||| |
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| T |
36200345 |
aatttggagtgtaag |
36200331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 36212063 - 36212000
Alignment:
| Q |
264 |
tgttttattttcaaagttaagtttagaattttgaaaattaacttggagtgtaaggctatgtttt |
327 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| | ||| | | ||||||||||||||||||| |
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|
| T |
36212063 |
tgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgtttt |
36212000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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