View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_15 (Length: 376)
Name: NF18177_low_15
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 36464199 - 36464551
Alignment:
| Q |
19 |
acaatgtctttggaaagtcattcatattgtcccaaaccatgaagaccaaactgcaatttaaattgcttttcatcaagtctaatttttggttagaaaagtt |
118 |
Q |
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| T |
36464199 |
acaatgtctttggaaagtcattcatattgtcccaaaccatgaagaccaaaatgcaatttaaattgcttttcatcaagtctaatttttggttagaaaagtt |
36464298 |
T |
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| Q |
119 |
cattacatgaatgttttgtttagaaatcaaagtctcctgaagaaaagnnnnnnngcctcttcttcaaaattgttggaagca-----------aataacaa |
207 |
Q |
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| T |
36464299 |
cattacatgaatgttttgtttagaaatcaaagtctcctgaagaaaagaaaaaaagcctcttcttcaaaattgttggaagcaaacacatacataataacaa |
36464398 |
T |
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| Q |
208 |
tgttatctaagctctgcttaaagttcagtgacaaaatatgtttaaagctcaagttagttaaataatgctaaagatgacatgttcaattctcattttttgt |
307 |
Q |
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| T |
36464399 |
tgttatctaagctctgcttaaagttcagtgacaa---------aaagctcaagttagttaaataatgctaaagatgacatgtttaattctcattttttgt |
36464489 |
T |
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| Q |
308 |
tggctaaatttatatgttaaaatttgtcgaaatattgtaccccgctttaatgattgtctgtg |
369 |
Q |
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| T |
36464490 |
tggttaaatttatatgttaaaatttgtcgaaatattgtaccccgctttaatgattgtttgtg |
36464551 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 14703654 - 14703704
Alignment:
| Q |
208 |
tgttatctaagctctgcttaaagttcagtgacaaaatatgtttaaagctca |
258 |
Q |
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| T |
14703654 |
tgttatccaagctctgcttaaagcttagtgacaaaatatgcttaaagctca |
14703704 |
T |
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