View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_16 (Length: 355)
Name: NF18177_low_16
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 10121702 - 10121379
Alignment:
| Q |
15 |
caaaggcagctaacaagtccacatcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatttcctgc |
114 |
Q |
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| T |
10121702 |
caaaggcagctaacaagtccacatcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatttcctgc |
10121603 |
T |
|
| Q |
115 |
tgctaacccattataattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121602 |
tgctaacccattataattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagag |
10121503 |
T |
|
| Q |
215 |
acttttttgtctgacccttcttctgcttcatatccactcatatagtatcttgctcctatcactttcctataatatactatcaatgattaaccaatgaaga |
314 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121502 |
acttttttgtctgacccttcttctgtttcatatccactcatatagtatcttgctcctatcactttcctataatatactatcaatgattaaccaatgaaga |
10121403 |
T |
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| Q |
315 |
cggtccaacttgaacctaataatg |
338 |
Q |
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|||||||||||||||||||||||| |
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| T |
10121402 |
cggtccaacttgaacctaataatg |
10121379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 30628375 - 30628644
Alignment:
| Q |
15 |
caaaggcagctaacaagtccacatcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatttcctgc |
114 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||| |||||||||||||| ||| ||| |
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| T |
30628375 |
caaatgcagctagcaagtccacatcatagcaacctgaatcccaacatgttttgtacacagcaattctagccataggtgcacctccccttgcacctccact |
30628474 |
T |
|
| Q |
115 |
tgctaacccattataattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagag |
214 |
Q |
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||||| || ||||||||||||||| || |||| ||||| ||| | |||||||||||||| |||||||| | |||||| || || |||||||| ||| |
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| T |
30628475 |
tgctagtcctttataattcatgttttgtacatatctccctgcagctattgaagctgtatggctaccatgacctgtgctgtccctagctgatctgaatgag |
30628574 |
T |
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| Q |
215 |
acttttttgtctgacccttcttctgcttcatatccactcatatagtatcttgctcctatcactttcctat |
284 |
Q |
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| |||| | |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30628575 |
atttttgcatttgactcttcctctgcttcatatccactcttatagtatcttgctcctatcactttcctat |
30628644 |
T |
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