View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_18 (Length: 318)
Name: NF18177_low_18
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 42891406 - 42891124
Alignment:
| Q |
19 |
catcagtcaaaattgtgccacaatacaaaacaagcccatttggaggaaccttgttataaagcttaagcctctgctgggcagaactgattgcaccaagcac |
118 |
Q |
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| T |
42891406 |
catcagtcaaaattgtgccacaatacaaaacaagcccatttggaggaaccttgttataaagcttaagcctctgctgggcagaactgattgcaccaagcac |
42891307 |
T |
|
| Q |
119 |
agactgtcgattcaccctacttttgatgtttgaagcagttccatactcattggcaagcatcttggtaacacgagatatttgatcacgcgggggtatgata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42891306 |
agactgtcgattcaccctacttttgatgtttgaagcagttccatactcattggcaagcatcttggtaacacgagatatttgatcacgcgggggtatgata |
42891207 |
T |
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| Q |
219 |
agagaaatcatacttgtcccatttcctctggcagcttcaagattcttcatcaattgcttgattttccacaccccaatgttctt |
301 |
Q |
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| T |
42891206 |
agagaaatcatacttgtcccatttcctctggcagcttcaagattcttcatcaattgcttgattttccacaccccaatgttctt |
42891124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 28920723 - 28920441
Alignment:
| Q |
19 |
catcagtcaaaattgtgccacaatacaaaacaagcccatttggaggaaccttgttataaagcttaagcctctgctgggcagaactgattgcaccaagcac |
118 |
Q |
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||||||||| |||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
28920723 |
catcagtcacaattgtaccagtatacaaaacaagcccgtttggagggaccttgttataaagcttaagcctctgctgagcagaagtgattgcaccaagcac |
28920624 |
T |
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| Q |
119 |
agactgtcgattcaccctacttttgatgtttgaagcagttccatactcattggcaagcatcttggtaacacgagatatttgatcacgcgggggtatgata |
218 |
Q |
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| T |
28920623 |
agactgtcgattcaccctactcttgatgtttgaagcagttccaaactcatcgccaagcatcttagtaacacgagcaatttgatcacgtgggggcatgata |
28920524 |
T |
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| Q |
219 |
agagaaatcatacttgtcccatttcctctggcagcttcaagattcttcatcaattgcttgattttccacaccccaatgttctt |
301 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| |||||||||| |
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| T |
28920523 |
agagaaatcatactcgtcccatttcctctggcagcttcaagagccttgatcaatttcttgattttccacacctcaatgttctt |
28920441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 44878335 - 44878508
Alignment:
| Q |
29 |
aattgtgccacaatacaaaacaagcccatttggaggaaccttgttataaagcttaagcctctgctgggcagaactgattgcaccaagcacagactgtcga |
128 |
Q |
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| T |
44878335 |
aattgtgccagtatacaaaacaagcccatttggaggaaccttgttataaagcttaagcctcttttgagcagaagcgattgcaccaagcttagactgtcga |
44878434 |
T |
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| Q |
129 |
ttcaccctacttttgatgtttgaagcagttccatactcattggcaagcatcttggtaacacgagatatttgatca |
203 |
Q |
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| T |
44878435 |
tatcccttactttttatgtttgaagcagttccaaactcatcaccaa-catcttggcaacacgagctacttgatca |
44878508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 256
Target Start/End: Original strand, 32764378 - 32764580
Alignment:
| Q |
54 |
ccatttggaggaaccttgttataaagcttaagcctctgctgggcagaactgattgcaccaagcacagactgtcgattcaccctacttttgatgtttgaag |
153 |
Q |
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||||||||||||||||| |||||||| || | |||||| || |||||| | || || |||||||| || || || || |||||||||||||||||||||| |
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| T |
32764378 |
ccatttggaggaaccttattataaagtttcaacctctgttgtgcagaagtaatggctccaagcactgattgccggtttaccctacttttgatgtttgaag |
32764477 |
T |
|
| Q |
154 |
cagttccatactcattggcaagcatcttggtaacacgagatatttgatcacgcgggggtatgataagagaaatcatacttgtcccatttcctctggcagc |
253 |
Q |
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|||||||| | |||| | | |||||| || ||||||||||||||||| || || || || || ||||||||||| || || ||||| ||||| ||||| |
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| T |
32764478 |
cagttccaaattcatctcccaacatcttagtgacacgagatatttgatcgcgtggaggcattatcagagaaatcatgctagtaccattacctcttgcagc |
32764577 |
T |
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| Q |
254 |
ttc |
256 |
Q |
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||| |
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| T |
32764578 |
ttc |
32764580 |
T |
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