View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_23 (Length: 287)
Name: NF18177_low_23
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 33427669 - 33427417
Alignment:
| Q |
20 |
tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaatttaggtgtgaaacatat |
119 |
Q |
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| T |
33427669 |
tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaatttaggtttgaaatatat |
33427570 |
T |
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| Q |
120 |
ttctctcctaagtatggaaattaaatgtaaaatatgtgtccgggaaaatgttcctagaatgaatctcaatgaaaagaattgctagctagcaaatgcttcg |
219 |
Q |
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| T |
33427569 |
ttctctcctaagtatggaaattaaatgtaaaatatgtgtcggggaaaatgttcctagaatgaatctcaatgaaaagaattgctagctagcaaatgcttcg |
33427470 |
T |
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| Q |
220 |
aaaatgttattgttttgatttgatgaattttgctattcgactagggtatatat |
272 |
Q |
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| T |
33427469 |
aaaatgttattgttttgatttgatgaattttgttattcgactagggtatatat |
33427417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 33410846 - 33410956
Alignment:
| Q |
17 |
tgatcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaatttaggtgtgaaa |
114 |
Q |
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| T |
33410846 |
tgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatagaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaa |
33410945 |
T |
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| Q |
115 |
catatttctct |
125 |
Q |
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| T |
33410946 |
aatatttctct |
33410956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 33416867 - 33416942
Alignment:
| Q |
181 |
aatctcaatgaaaagaattgctagctagcaaatgcttcgaaaatgttattgttttga-tttgatgaattttgctattc |
257 |
Q |
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| T |
33416867 |
aatctcaatcaaaagaatagctagctagcaaatgctgcgcaaatat--ttgttttgattttgatgaattgtgcaattc |
33416942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 33424761 - 33424850
Alignment:
| Q |
17 |
tgatcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaattt |
104 |
Q |
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| T |
33424761 |
tgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaattt |
33424850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 33416705 - 33416804
Alignment:
| Q |
29 |
attgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaatttaggtgtgaaacatatttctctc |
126 |
Q |
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| T |
33416705 |
attgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaatatttctctc |
33416804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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