View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_25 (Length: 264)
Name: NF18177_low_25
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 28647483 - 28647734
Alignment:
| Q |
1 |
atagttgtacaaatatcatttatcatgcggataacgtaataaagttcatacatttgaggtgtttgtgaccaattgttaggtgtccaaagattaattttgc |
100 |
Q |
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| T |
28647483 |
atagttatacaaatatcatttctcatatgcataacgtaataaagttcataaattggaggtgcttgtgaccaattgttaggtgtccaaagattaattttgc |
28647582 |
T |
|
| Q |
101 |
aaagtacagttaaaggcccaaatcataacagtccaaagttcaacgta--gggagcttaaaagtgtaattacaagttttgttttaaaaaacgtaattagag |
198 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28647583 |
aaagtatagttaaaggcccaaatcataacagtccaaagttcaacgtagggggagcttaaaagtgtaattacaagttttgttttaaaaaacgtaattagag |
28647682 |
T |
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| Q |
199 |
agaactaaacctaaattatctcttttaaatttcaaaacaaactgcaaaaaat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28647683 |
agaactaaacctaaattatctcttttaaatttcaaaacaaactgcaaaaaat |
28647734 |
T |
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