View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18177_low_34 (Length: 227)

Name: NF18177_low_34
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18177_low_34
NF18177_low_34
[»] chr6 (10 HSPs)
chr6 (35-227)||(2997868-2998060)
chr6 (17-227)||(2933996-2934206)
chr6 (31-227)||(2972411-2972607)
chr6 (38-194)||(2929304-2929460)
chr6 (31-227)||(2963892-2964089)
chr6 (20-227)||(3004252-3004459)
chr6 (20-227)||(2982275-2982473)
chr6 (31-227)||(2926571-2926767)
chr6 (35-227)||(2951357-2951549)
chr6 (145-227)||(2659474-2659556)
[»] chr7 (1 HSPs)
chr7 (31-227)||(3338592-3338788)
[»] scaffold0024 (1 HSPs)
scaffold0024 (63-227)||(35698-35862)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 2998060 - 2997868
Alignment:
Q  35 accaagcttttcattttcttgcagactctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggagtagagccaccttcaaccg 134  Q
    |||||||||||||||||||||| ||||||||| |||||||| || | ||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  2998060 accaagcttttcattttcttgctgactctcaatatgtcattttccgatttggtggatgatatcaatgccatgcttgaaggagcagagccaccttcaaccg 2997961  T
Q  135 gtgactgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattggcccctttcacc 227  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  2997960 gtgactgttgcatctacaaggtcccctctaaaattcgcaaactcaacgcagacgcatacacccccactgtcgtttccattggcccctttcacc 2997868  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 2933996 - 2934206
Alignment:
Q  17 aatagggagtgtcaaaagaccaagcttttcattttcttgcagactctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggag 116  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||  | |||||   ||||||||||||||||||||||  ||    
T  2933996 aatagggagtgtcaaaagaccaagcttttcattttcttgctgactctcaatatgtcactctccagcttggttattgatatcaatgccatgctcgacaaag 2934095  T
Q  117 tagagccaccttcaaccggtgactgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattgg 216  Q
     |||| |||||||||||| |||||||| |||||| |||||||| | |   ||||||| || |||  ||||||||||||||||||||||||||||||||||    
T  2934096 cagagtcaccttcaaccgatgactgttgcatctataaggtcccttatgttattcgcagacacaacaaagacgcatacacccccactgtcgtttccattgg 2934195  T
Q  217 cccctttcacc 227  Q
    |||||||||||    
T  2934196 cccctttcacc 2934206  T

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Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 2972411 - 2972607
Alignment:
Q  31 aaagaccaagcttttcattttcttgcagac-tctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggagtagagccaccttc 129  Q
    ||||||||||||||||||||||||||  || ||||||||||||| ||||  | |||||||||   |||||||  |||||||||  || ||||||||||||    
T  2972411 aaagaccaagcttttcattttcttgctcacctctcaagatgtcactctcctgcttggtggat---atcaatgtgatgctcgacacagaagagccaccttc 2972507  T
Q  130 aaccggtgactgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgc--atacacccccactgtcgtttccattggcccctttcacc 227  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||  |||||| ||||  |||||||||||||||||||||||||    
T  2972508 aaccggtgactgttgcatctacaaggtcccctctaaaattcgcaaactcaacgaagaggcatatacactcccaaagtcgtttccattggcccctttcacc 2972607  T

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Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 38 - 194
Target Start/End: Original strand, 2929304 - 2929460
Alignment:
Q  38 aagcttttcattttcttgcagactctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggagtagagccaccttcaaccggtg 137  Q
    |||||||||||||||||||  |||||||||||||||| |||  | ||||||||||||||||||||||||||| ||  || ||||||||||||||| | ||    
T  2929304 aagcttttcattttcttgctaactctcaagatgtcatcctcccgcttggtggatgatatcaatgccatgctcaacacagcagagccaccttcaactgatg 2929403  T
Q  138 actgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgcataca 194  Q
    |||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  2929404 actgttgcatctacaaggttccctctaaaattcgcaaactcaacgaagacgcataca 2929460  T

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Target: chr6; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 2963892 - 2964089
Alignment:
Q  31 aaagaccaagcttttcattttcttgcagac-tctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggagtagagccaccttc 129  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||  | |||||  ||||||||||  |||||||||||  || ||||||||||||    
T  2963892 aaagaccaagcttttcattttcttgctgacctctcaagatgtcattctcccgcttggttaatgatatcaaaaccatgctcgacacagcagagccaccttc 2963991  T
Q  130 aaccggtgactgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattggcccctttcacc 227  Q
    ||||  ||| |||| ||||||||||||||||||| | ||||||| |||||| ||| |||||||||||||||   |||||||||| |||||||||||||    
T  2963992 aacctatgattgttgcatctacaaggtcccctctgatattcgcacactcaacgaaaacgcatacacccccaagttcgtttccatcggcccctttcacc 2964089  T

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Target: chr6; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 3004459 - 3004252
Alignment:
Q  20 agggagtgtcaaaagacc---aagcttttcattttcttgcagactctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggag 116  Q
    |||||||||||||||||    |||||||||||||||||||  |||||||| |||||||||||  | ||||||||||||||||||||||||||| ||  ||    
T  3004459 agggagtgtcaaaagacttgaaagcttttcattttcttgctaactctcaatatgtcattctccagcttggtggatgatatcaatgccatgctcaacacag 3004360  T
Q  117 tagagccaccttcaaccggtgactgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattgg 216  Q
      |||||||||||   || | | |||| ||||||||||||||||| |   ||||||| || |||  ||||||||||||||||||||||||||||||||||    
T  3004359 ccgagccaccttc---cgataagtgttgcatctacaaggtcccctatgttattcgcagacacaacaaagacgcatacacccccactgtcgtttccattgg 3004263  T
Q  217 cccctttcacc 227  Q
    |||||||||||    
T  3004262 cccctttcacc 3004252  T

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Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 2982275 - 2982473
Alignment:
Q  20 agggagtgtcaaaagaccaagcttttcattttcttgcagactctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggagtag 119  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||      ||||||||   |||||||| ||||||||| | | ||    
T  2982275 agggagtgccaaaagaccaagcttttcatttccttgctgactctcaagatgtcatcct------tggtggat---atcaatgcgatgctcgacagcgcag 2982365  T
Q  120 agccaccttcaaccggtgactgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattggccc 219  Q
    |||||||| |||||   ||| ||| |||||||||||||||||||   ||||||| | |||| ||| ||||||||||||||| ||||||||||||||||||    
T  2982366 agccacctccaaccaaggaccgttgcatctacaaggtcccctctgttattcgcacagtcaacgaaaacgcatacacccccaatgtcgtttccattggccc 2982465  T

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Target: chr6; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 2926571 - 2926767
Alignment:
Q  31 aaagaccaagcttttcattttcttgcagactctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggagtagagccaccttca 130  Q
    |||||||||||||||||||||||||  ||||||||||||||||| |||  | ||| || | ||||||||| |||||||| ||  || |||| ||||||||    
T  2926571 aaagaccaagcttttcattttcttggtgactctcaagatgtcatcctcccgcttgctgaaggatatcaattccatgctcaacacagcagagtcaccttca 2926670  T
Q  131 accggtgactgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattggcccctttcacc 227  Q
    |||| ||||||||  ||||| |||||||||| |   ||||||| || |||  ||||||||||||||||||  |||||||| ||||||||||||||||    
T  2926671 accgatgactgttgtatctataaggtcccctatgttattcgcagacacaacaaagacgcatacacccccaaggtcgtttctattggcccctttcacc 2926767  T

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Target: chr6; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 2951357 - 2951549
Alignment:
Q  35 accaagcttttcattttcttgcagactctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggagtagagccaccttcaaccg 134  Q
    ||||||||||||||| |||||| |||||| |||||||||| |||  | |||||| ||||||||||||| |||||| ||  || | | ||||||||||| |    
T  2951357 accaagcttttcattctcttgctgactctgaagatgtcatcctcctgcttggtgaatgatatcaatgcgatgctccacacagcacatccaccttcaacag 2951456  T
Q  135 gtgactgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattggcccctttcacc 227  Q
     ||| |||| ||||||||||||||||| |   |||||||  | |||  ||||||||||||||||||  |||||||||||||||||||||||||    
T  2951457 atgagtgttgcatctacaaggtcccctatgttattcgcaggcacaacaaagacgcatacacccccaaggtcgtttccattggcccctttcacc 2951549  T

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Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 2659556 - 2659474
Alignment:
Q  145 catctacaaggtcccctctaaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattggcccctttcacc 227  Q
    |||||||||||||||||||   ||||||| |||||| ||| | ||||||||||||||| ||||||||||||||||||||||||    
T  2659556 catctacaaggtcccctctgctattcgcacactcaacgaaaaagcatacacccccactctcgtttccattggcccctttcacc 2659474  T

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Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 3338592 - 3338788
Alignment:
Q  31 aaagaccaagcttttcattttcttgcagactctcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggagtagagccaccttca 130  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |||  | |||||||||||||||||||| |||||||||  |  |||||||||||||    
T  3338592 aaagaccaaccttttcattttcttgctgactctcaagatgtcatcctcccgcttggtggatgatatcaatgcgatgctcgacacatcagagccaccttca 3338691  T
Q  131 accggtgactgtttcatctacaaggtcccctctaaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattggcccctttcacc 227  Q
    |||| |||||||| ||||||||| || ||||||   |||||||||| ||||||||||||||||||||| |   ||||||||||||||||||||||||    
T  3338692 accgatgactgttgcatctacaaagtaccctctgttattcgcaaacacaatgaagacgcatacacccctaagttcgtttccattggcccctttcacc 3338788  T

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Target: scaffold0024 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 227
Target Start/End: Complemental strand, 35862 - 35698
Alignment:
Q  63 tcaagatgtcattctctggtttggtggatgatatcaatgccatgctcgacggagtagagccaccttcaaccggtgactgtttcatctacaaggtcccctc 162  Q
    ||||||||||||| ||  | ||||| |||||||| ||||  |||||| ||  || |||  |||||||||||| | |  ||| ||||||||||||||||||    
T  35862 tcaagatgtcattgtccagcttggttgatgatatgaatgtgatgctccacacagcagatgcaccttcaaccgataatcgttgcatctacaaggtcccctc 35763  T
Q  163 taaaattcgcaaactcaatgaagacgcatacacccccactgtcgtttccattggcccctttcacc 227  Q
    |   |||||||||| ||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  35762 tgttattcgcaaacacaatgaagacgcatacacccctaatttcgtttccattggcccctttcacc 35698  T

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