View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_36 (Length: 222)
Name: NF18177_low_36
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_36 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 29240329 - 29240530
Alignment:
| Q |
19 |
ttgcaacaactcacacttagttcgttattatttacgcagttgtgcaatccgtaggagtttgctatggagtgcttggcaataatctaccatcaagtcaaga |
118 |
Q |
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| T |
29240329 |
ttgcaacaactcac--ttagttcgttattatttacgcagttgtgcaatccgtaggagtttgctatggagtgcttggcaataatctaccatcaagtcaaga |
29240426 |
T |
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| Q |
119 |
agttgtggacttatacaattcaaatggcattgacaaaatgcgtatgtacttcccagacgaacaagcccttcaagcccttaaaggttccaacatagaattg |
218 |
Q |
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| T |
29240427 |
agttgtggacttatataagtcaaatggcattgacaaaatgcgtatatacttcccagacgaacaagcccttcaagcccttaaaggttccaacatagaattg |
29240526 |
T |
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| Q |
219 |
atcc |
222 |
Q |
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|||| |
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| T |
29240527 |
atcc |
29240530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 29234585 - 29234736
Alignment:
| Q |
19 |
ttgcaacaactcacacttagttcgttattatttacgcagttgtgcaatccgtaggagtttgctatggagtgcttggcaataatctaccatcaagtcaaga |
118 |
Q |
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| T |
29234585 |
ttgcaacgactcacacttagttcgttattgtt-acgcagttgtgcaatccgtaggagtttgctatggaatgcttggcaataatctaccatcaaggcaaga |
29234683 |
T |
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| Q |
119 |
agttgtggacttatacaattcaaatggcattgacaaaatgcgtatgtacttcc |
171 |
Q |
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| T |
29234684 |
agttgtggatttatataagtcaaatggcattgactaaatgcgtatatacttcc |
29234736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 29225186 - 29225354
Alignment:
| Q |
54 |
gcagttgtgcaatccgtaggagtttgctatggagtgcttggcaataatctaccatcaagtcaagaagttgtggacttatacaattcaaatggcattgaca |
153 |
Q |
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| T |
29225186 |
gcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaagatgttgtgaatttatataaatcaagaggcattaacc |
29225285 |
T |
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| Q |
154 |
aaatgcgtatgtacttcccagacgaacaagcccttcaagcccttaaaggttccaacatagaattgatcc |
222 |
Q |
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| T |
29225286 |
aaatgcgtatattcttcccagacgaaccagccctccaagcccttagaggttccaacatagaattgatcc |
29225354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 29250657 - 29250804
Alignment:
| Q |
75 |
gtttgctatggagtgcttggcaataatctaccatcaagtcaagaagttgtggacttatacaattcaaatggcattgacaaaatgcgtatgtacttcccag |
174 |
Q |
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| T |
29250657 |
gtttgctatggagtgcttggcaataatctaccatcaaagcaagaagttgtagatttatataaatcaaaaggcattggcaaaatgcgtatatactacccag |
29250756 |
T |
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| Q |
175 |
acgaacaagcccttcaagcccttaaaggttccaacatagaattgatcc |
222 |
Q |
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| T |
29250757 |
atcaagaagtcctacaagcccttagaggttctaacattgaattgatcc |
29250804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 29229850 - 29230018
Alignment:
| Q |
54 |
gcagttgtgcaatccgtaggagtttgctatggagtgcttggcaataatctaccatcaagtcaagaagttgtggacttatacaattcaaatggcattgaca |
153 |
Q |
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| T |
29229850 |
gcagctgtggaatccataggagtttgctatgggatgattggaaataatctaccatctaggcaagatgttgtgaatttatatagatcaagaggcattaacc |
29229949 |
T |
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| Q |
154 |
aaatgcgtatgtacttcccagacgaacaagcccttcaagcccttaaaggttccaacatagaattgatcc |
222 |
Q |
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| T |
29229950 |
aaatgcgtctttacttcccagatgaacaagccctccaagcccttagaggttccaacatagagttgatcc |
29230018 |
T |
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