View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_39 (Length: 209)
Name: NF18177_low_39
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 14622323 - 14622147
Alignment:
| Q |
14 |
tgagatgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagc |
113 |
Q |
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| T |
14622323 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaacccaagttccaagc |
14622224 |
T |
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| Q |
114 |
tgctgctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcac |
190 |
Q |
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| T |
14622223 |
tgcggctacgctgtaatacgcacaaggaatgttgaaactcttggttatcgacggtaaccaatccgatactacatcac |
14622147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 14588665 - 14588489
Alignment:
| Q |
14 |
tgagatgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagc |
113 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||| |
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| T |
14588665 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaagttccgagc |
14588566 |
T |
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| Q |
114 |
tgctgctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcac |
190 |
Q |
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| T |
14588565 |
tgcgcctatgctgtaatacgcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcac |
14588489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 11530203 - 11530045
Alignment:
| Q |
18 |
atgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagctgct |
117 |
Q |
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| T |
11530203 |
atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagctgga |
11530104 |
T |
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| Q |
118 |
gctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatc |
176 |
Q |
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| T |
11530103 |
acaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatc |
11530045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 1361595 - 1361556
Alignment:
| Q |
14 |
tgagatgaatggttgtttggaaaggagcccattttggtgg |
53 |
Q |
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| T |
1361595 |
tgagatgaatggttgtttgaaaaggaacccattttggtgg |
1361556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 29954238 - 29954080
Alignment:
| Q |
18 |
atgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagctgct |
117 |
Q |
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|||||||| |||||| |||||| |||| |||||||| ||| || ||||||| | || | ||| |||||||||| | |||| | ||||||||||| |
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| T |
29954238 |
atgaatggatgtttgaaaaggaacccactttggtgggctacacctatctatgttgatttgatcctttggtggatttgataaacatatgttccaagctggg |
29954139 |
T |
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| Q |
118 |
gctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatc |
176 |
Q |
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| ||| |||||| |||||||||||||||| || || ||||| |||||||||||||| |
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| T |
29954138 |
acaacgttgtaatgagcacaaggaatgttgaggcttttcgctattgacggtaaccaatc |
29954080 |
T |
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