View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18177_low_4 (Length: 542)
Name: NF18177_low_4
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_4 |
 | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
| [»] scaffold0437 (1 HSPs) |
| | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 41248082 - 41248558
Alignment:
| Q |
1 |
aaactgccttt-gtcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaaatg |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248082 |
aaactgccttttgtcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaaatg |
41248181 |
T |
|
| Q |
100 |
atgcgcatagtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacct |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248182 |
atgcgcatagtaataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacct |
41248281 |
T |
|
| Q |
200 |
gcgcccctgtgatcttaggaataaggatcaacatatttgaattaatattaggtgggagaacaccagggagagtggtgtcaaattgaggttccgtccatct |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41248282 |
gcgcccctgtgatcttaggaataaggaccaacatatttgaattaatattaggtgggagaacactagggagagtggtgtcaaattgaggttacgtccatct |
41248381 |
T |
|
| Q |
300 |
ctgtagcaaggccattgttgcaccttcaattatgtcaaattggcatatccatgatgacagtgagagtggtttaggataagattcaagtgcaatagcctaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248382 |
ctgtagcaaggccattgttgcaccttcaattatgtcaaattggcatatccatgatgagagtgagagtggtttaggataagattcaagtgcaatagcctaa |
41248481 |
T |
|
| Q |
400 |
gaaagatacaaagctgtgttagtactagttgatcaaataaaataaaataactatttcatatgtaatgatattttata |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
41248482 |
gaaagatacaaagctgtgttagtactagttgatcaaataaaaataaataactatttcatatgtaataatattttata |
41248558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 468 - 542
Target Start/End: Original strand, 41248957 - 41249031
Alignment:
| Q |
468 |
tattttatattattgaaatatgagattgaaaaactcacatgcaggatcacaaaacaagtccaactgaaacaaaac |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248957 |
tattttatattattgaaatatgagattgaaaaactcacatgcaggatcacaaaacaagtccaactgaaacaaaac |
41249031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 44377576 - 44377481
Alignment:
| Q |
126 |
gtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctgtgatcttaggaat |
221 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||| || | ||| ||||| ||||| ||||||||| | || ||||||| || |||||||| |
|
|
| T |
44377576 |
gtcagccaaaatcttcgtcacaattttaaattgaaaattagctaaagcaataggtcggaaatctcccatagcttgggcccctggaattttaggaat |
44377481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 44393156 - 44393061
Alignment:
| Q |
126 |
gtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctgtgatcttaggaat |
221 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||| || | ||| ||||| ||||| ||||||||| | || ||||||| || |||||||| |
|
|
| T |
44393156 |
gtcagccaaaatcttcgtcacaattttaaattgaaaattagctaaagcaataggtcggaaatctcccatagcttgggcccctggaattttaggaat |
44393061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10708642 - 10708905
Alignment:
| Q |
1 |
aaactgcctttg-tcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaaatg |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||||| |||||||||||| |||||||||| ||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
10708642 |
aaactgccttttatcaatcatactaaccgcctttgatgcaataataatacaaaccgaaatattcctatcctgaataaacccctgttgctccgaagaaatg |
10708741 |
T |
|
| Q |
100 |
atgcgcatagtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacct |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |
|
|
| T |
10708742 |
atgcgcatagtgataatagaaagtttgtcaactaaaattttcgaaacaattttaaattgaaaatttgcaagagctataggacggaagtcccccatggcat |
10708841 |
T |
|
| Q |
200 |
gcgcccctgtgatcttaggaataaggatcaacatatttgaattaatattaggtgggagaacacc |
263 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10708842 |
gcgcccctgtgatcttaggaataaggaccagcatatttgaattaatattaggcgggagaacacc |
10708905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10922412 - 10922675
Alignment:
| Q |
1 |
aaactgcctttg-tcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaaatg |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||||| |||||||||||| |||||||||| ||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
10922412 |
aaactgccttttatcaatcatactaaccgcctttgatgcaataataatacaaaccgaaatattcctatcctgaataaacccctgttgctccgaagaaatg |
10922511 |
T |
|
| Q |
100 |
atgcgcatagtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacct |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |
|
|
| T |
10922512 |
atgcgcatagtgataatagaaagtttgtcaactaaaattttcgaaacaattttaaattgaaaatttgcaagagctataggacggaagtcccccatggcat |
10922611 |
T |
|
| Q |
200 |
gcgcccctgtgatcttaggaataaggatcaacatatttgaattaatattaggtgggagaacacc |
263 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10922612 |
gcgcccctgtgatcttaggaataaggaccagcatatttgaattaatattaggcgggagaacacc |
10922675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 20382727 - 20382629
Alignment:
| Q |
124 |
ctgtcagctaaaattttcgtaacaattttaaattg-aaaatttgcaagagctataggacggaagtctcccataacctgcgcccctgtgatcttaggaat |
221 |
Q |
| |
|
||||| |||||| |||| |||||||||||||| || ||||| || ||||||||| ||| |||||| |||||| |||| |||| ||||| ||||||||| |
|
|
| T |
20382727 |
ctgtctgctaaagttttagtaacaattttaaactgaaaaatccgctagagctataagacagaagtcacccatagcctgggcccgtgtgaccttaggaat |
20382629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 43875 - 44080
Alignment:
| Q |
13 |
tcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaaatgatgcgcatagtga |
112 |
Q |
| |
|
||||||| ||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| | |
|
|
| T |
43875 |
tcaatcaaattaatggcctctgatgcaagaataatacactccgaaatatttctatcacgaataaacccccgctgctccggagaaataatgcgcatagcaa |
43974 |
T |
|
| Q |
113 |
taatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctgtgat |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||||||||| || |||||||||||||||||||||||||| ||||| |||| ||| ||| ||| |
|
|
| T |
43975 |
taatagaaagtctgtcagctaagatttttgtgacaattttaaattggaagtttgcaagagctataggacggaagtcccccatgacctacgctcctttgac |
44074 |
T |
|
| Q |
213 |
cttagg |
218 |
Q |
| |
|
|||||| |
|
|
| T |
44075 |
cttagg |
44080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 21490441 - 21490691
Alignment:
| Q |
13 |
tcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaaatgatgcgcatagtga |
112 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||| |||||||||| || ||||||||||||| | ||||||| | |
|
|
| T |
21490441 |
tcaatcaaattaatggcctccgatgcaataataatacactccgaaatatttctatcatgaataaacccgcgctgctccggagaaacaacacgcatagcaa |
21490540 |
T |
|
| Q |
113 |
taatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctgtgat |
212 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||| || || ||||||||||||||||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
21490541 |
taatagagagtctgtcagctaaaatttttgtgacaattttaaattggaagttagcaagagctataggacgaaagtcccccatgacctgcgctcctgtgac |
21490640 |
T |
|
| Q |
213 |
cttaggaataaggatcaacatatttgaattaatattaggtgggagaacacc |
263 |
Q |
| |
|
|||||| | || | | |||||| || ||||||||||| |||||| |||| |
|
|
| T |
21490641 |
cttagggagaaaaacaagcatattagagttaatattaggcgggagagcacc |
21490691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 41346571 - 41346631
Alignment:
| Q |
135 |
aattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccata |
195 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||| ||| ||||||||| ||||||||||| |
|
|
| T |
41346571 |
aattttagtaataattttaaattgaaagtttgcagcagcgataggacggtagtctcccata |
41346631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 125582 - 125393
Alignment:
| Q |
1 |
aaactgcctttg-tcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaaatg |
99 |
Q |
| |
|
||||||||||| |||||| ||||||| ||| |||||| | ||||||||| |||| ||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
125582 |
aaactgccttttatcaatcctattaacgacctttgatgcaagaataatacatcccgatatattcctatcatgaataaaagcccgttgctccggagaaatg |
125483 |
T |
|
| Q |
100 |
atgcgcatagtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccat |
194 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
125482 |
atgcgcatag-----atagagagcctgtcagctaatatcttcgtaacaattttaaattgaaaatttgcaagagcaatagggcgaaagtctcccat |
125393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 31349183 - 31349273
Alignment:
| Q |
118 |
gaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctg |
208 |
Q |
| |
|
|||| |||||||||||||||||| || | ||||||||| |||||||||| | ||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
31349183 |
gaaaatctgtcagctaaaatttttgtgataattttaaactgaaaatttgtcaaagctataggtcggaaatcacccataacctgcgcccctg |
31349273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 16224589 - 16224540
Alignment:
| Q |
133 |
aaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacg |
182 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
16224589 |
aaaatcttcgcaacaattttaaattgaaaatttgcgagagaaataggacg |
16224540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 22833997 - 22834049
Alignment:
| Q |
112 |
ataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatt |
164 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||| |||||||||||||||||| |
|
|
| T |
22833997 |
ataatagccagtctgtcagccaaaatcttagtaataattttaaattgaaaatt |
22834049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 8416 - 8354
Alignment:
| Q |
120 |
aagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacg |
182 |
Q |
| |
|
||||||||| || | ||||||||| |||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
8416 |
aagtctgtcggccacaattttcgtgacaattttaaattgaaaattggcaagcgctatgggacg |
8354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 7664850 - 7664808
Alignment:
| Q |
125 |
tgtcagctaaaattttcgtaacaattttaaattgaaaatttgc |
167 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7664850 |
tgtcagctaaaattttagtaacaattttaaactgaaaatttgc |
7664808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 8778 - 8705
Alignment:
| Q |
135 |
aattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctg |
208 |
Q |
| |
|
|||||| |||| || |||||| ||||||||||||||||| || || || |||||||||||||| ||| ||||| |
|
|
| T |
8778 |
aattttagtaataactttaaactgaaaatttgcaagagcaatcggtcgatagtctcccataacccgcggccctg |
8705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 26233 - 26301
Alignment:
| Q |
127 |
tcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccata |
195 |
Q |
| |
|
|||||||||||||| || | ||||| || |||||||| |||||||| ||||||||| |||| |||||| |
|
|
| T |
26233 |
tcagctaaaattttagttattattttgaactgaaaattcgcaagagcaataggacggtagtcacccata |
26301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 26695389 - 26695337
Alignment:
| Q |
112 |
ataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatt |
164 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||| |||||||||||||||||| |
|
|
| T |
26695389 |
ataatagccagtctgtcagccaaaatcttagtaataattttaaattgaaaatt |
26695337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 26965121 - 26965069
Alignment:
| Q |
112 |
ataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatt |
164 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||| |||||||||||||||||| |
|
|
| T |
26965121 |
ataatagccagtctgtcagccaaaatcttagtaataattttaaattgaaaatt |
26965069 |
T |
|
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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 14676909 - 14676977
Alignment:
| Q |
127 |
tcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccata |
195 |
Q |
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| T |
14676909 |
tcagctaaaattttagttattattttgaactgaaaattcgcaagagcaataggacggtagtcacccata |
14676977 |
T |
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