View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_5 (Length: 538)
Name: NF18177_low_5
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 135 - 404
Target Start/End: Complemental strand, 48787805 - 48787535
Alignment:
| Q |
135 |
gcaagcatgattgagttgtggtgtggcctttggactgcaactctgtatgttgcttagccttttttgttaatttgtttggcttatcgctttgtacttt-ct |
233 |
Q |
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| T |
48787805 |
gcaagcatgattgagttgtggtgtggcctttggactgcaactctgtatgttgcttagccttttttgttaatttgtttggcttatcgctttgtacttttct |
48787706 |
T |
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| Q |
234 |
agagtgctgcttgtcgagttgctctcatccttttaatgataatttcatttttcctagattggtgtggtccatgcttatataacagcgtgtaaaaggaaaa |
333 |
Q |
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| T |
48787705 |
agagtgctgcttgtcgagttgctctcatccttttaatgataatttcatttttcctagattggtgtggtccatgcttatataacagtgtgtaaaatgaaaa |
48787606 |
T |
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| Q |
334 |
ttcatatctaacaacacataattnnnnnnncaatatgatgtggacatcaatttataagtactgaaatacat |
404 |
Q |
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| T |
48787605 |
ttcatatctaacaacacataattaaaaaaacaatatgatgtggacatcaatttataagtactgaaatacat |
48787535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 48787918 - 48787867
Alignment:
| Q |
18 |
ggtctgacatattctcactcctaacggcaagtgtgtgtagccatgaataaatgtcc |
73 |
Q |
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| T |
48787918 |
ggtctgacatattctcactcctaatggcaa----gtgtagccatgaataaatgtcc |
48787867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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