View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18177_low_6 (Length: 518)
Name: NF18177_low_6
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18177_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 27109553 - 27109754
Alignment:
| Q |
5 |
gaggagcacagacaataagttttatgttcgtggaattgttgcttcaagtgttcttttagttgcattccttgccatgtttgtggtttctgtcctttcctcc |
104 |
Q |
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| T |
27109553 |
gaggagcacaaacaataagttttatgttcgtggaattgttgcttcaagtgttcttttagttgcattccttgccatgtttgtggtttctgtcctttcctcc |
27109652 |
T |
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| Q |
105 |
ttcaatcgaaacaaaaaaggcatttttgggtgatgacaacaaatcaattgaagtagagatactaataaatacttgttagatgaatttttcatgtaatttg |
204 |
Q |
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| T |
27109653 |
ttcaatcgaaacaaaaaaggcatttttgggtgatgacaacaaatcaattgaagtagagatactaataaatacttgttagatgaatttttcatgtaatttg |
27109752 |
T |
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| Q |
205 |
tt |
206 |
Q |
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|| |
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| T |
27109753 |
tt |
27109754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 27151350 - 27151551
Alignment:
| Q |
5 |
gaggagcacagacaataagttttatgttcgtggaattgttgcttcaagtgttcttttagttgcattccttgccatgtttgtggtttctgtcctttcctcc |
104 |
Q |
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| T |
27151350 |
gaggagcacaaacaataagttttatgttcgtggaattgttgcttcaagtgttcttttagttgcattccttgccatgtttgtggtttctgtcctttcctcc |
27151449 |
T |
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| Q |
105 |
ttcaatcgaaacaaaaaaggcatttttgggtgatgacaacaaatcaattgaagtagagatactaataaatacttgttagatgaatttttcatgtaatttg |
204 |
Q |
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| T |
27151450 |
ttcaatcgaaacaaaaaaggcatttttgggtgatgacaacaaatcaattgaagtagagatactaataaatacttgttagatgaatttttcatgtaatttg |
27151549 |
T |
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| Q |
205 |
tt |
206 |
Q |
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| T |
27151550 |
tt |
27151551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 304 - 503
Target Start/End: Original strand, 27109751 - 27109950
Alignment:
| Q |
304 |
tgttctgaattaggtgctttttcttattgaaattcaagtaaagcatttcatttaagattatattatcaatatgcaaatatgaataaactcaatgatatag |
403 |
Q |
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| T |
27109751 |
tgttctgaattaggtgctttttcttattgaaattcaagtaaagcatttcatttaagattatattatcaatatgcaaatatgaataaactcaatgatatcg |
27109850 |
T |
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| Q |
404 |
agactaattgtttctttgtgttttaatgcaaacttcgatacaaagtttggtttaccatcgggagcgggatttggatcctcaacaaccatactccccactg |
503 |
Q |
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| T |
27109851 |
agactaattgtttctttgtgtcttaatgcaaactttgatacaaagtttggtttaccatcgggaacgggatttggatcctcaacaaccatactccccactg |
27109950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 304 - 503
Target Start/End: Original strand, 27151548 - 27151747
Alignment:
| Q |
304 |
tgttctgaattaggtgctttttcttattgaaattcaagtaaagcatttcatttaagattatattatcaatatgcaaatatgaataaactcaatgatatag |
403 |
Q |
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| T |
27151548 |
tgttctgaattaggtgctttttcttattgaaattcaagtaaagcatttcatttaagattatattatcaatatgcaaatatgaataaactcaatgatatcg |
27151647 |
T |
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| Q |
404 |
agactaattgtttctttgtgttttaatgcaaacttcgatacaaagtttggtttaccatcgggagcgggatttggatcctcaacaaccatactccccactg |
503 |
Q |
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| T |
27151648 |
agactaattgtttctttgtgtcttaatgcaaactttgatacaaagtttggtttaccatcgggaacgggatttggatcctcaacaaccatactccccactg |
27151747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 27112840 - 27112922
Alignment:
| Q |
140 |
acaacaaatcaattgaagtagagatactaataa-atacttgttagatgaatttttcatgtaatttgttgttcatcttgctttta |
222 |
Q |
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| T |
27112840 |
acaacaaatcaattgaagtagagctattaataagagatttgttagatgaa-ttttcatgtattttgattttcatcttgctttta |
27112922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 27154633 - 27154715
Alignment:
| Q |
140 |
acaacaaatcaattgaagtagagatactaataa-atacttgttagatgaatttttcatgtaatttgttgttcatcttgctttta |
222 |
Q |
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| T |
27154633 |
acaacaaatcaattgaagtagagctattaataagagatttgttagatgaa-ttttcatgtattttgattttcatcttgctttta |
27154715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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