View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18177_low_7 (Length: 484)

Name: NF18177_low_7
Description: NF18177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18177_low_7
NF18177_low_7
[»] chr2 (17 HSPs)
chr2 (9-302)||(28741543-28741836)
chr2 (9-289)||(28733364-28733644)
chr2 (13-238)||(28717744-28717970)
chr2 (398-474)||(28741301-28741377)
chr2 (187-296)||(28670874-28670983)
chr2 (352-473)||(19616340-19616461)
chr2 (187-296)||(28642291-28642400)
chr2 (187-296)||(28675018-28675127)
chr2 (187-296)||(28691494-28691603)
chr2 (187-296)||(28651152-28651261)
chr2 (356-473)||(15342279-15342397)
chr2 (187-296)||(28696379-28696488)
chr2 (353-436)||(21626586-21626670)
chr2 (406-473)||(28719057-28719124)
chr2 (301-336)||(28741387-28741422)
chr2 (399-474)||(29800419-29800494)
chr2 (257-295)||(28717704-28717742)
[»] chr4 (4 HSPs)
chr4 (352-473)||(30040750-30040872)
chr4 (356-473)||(11420924-11421042)
chr4 (352-436)||(19365423-19365508)
chr4 (368-459)||(9537881-9537973)
[»] chr6 (6 HSPs)
chr6 (370-436)||(23846700-23846767)
chr6 (352-473)||(20736604-20736726)
chr6 (352-473)||(21994492-21994614)
chr6 (352-466)||(4073480-4073595)
chr6 (352-473)||(8612820-8612941)
chr6 (400-473)||(22560460-22560533)
[»] scaffold0466 (1 HSPs)
scaffold0466 (356-473)||(13225-13343)
[»] scaffold0136 (1 HSPs)
scaffold0136 (353-474)||(8636-8758)
[»] chr7 (11 HSPs)
chr7 (352-473)||(3587813-3587935)
chr7 (353-471)||(15170307-15170428)
chr7 (352-473)||(19393700-19393822)
chr7 (352-473)||(28130465-28130587)
chr7 (352-436)||(18259437-18259522)
chr7 (352-473)||(47167135-47167257)
chr7 (352-436)||(2935935-2936020)
chr7 (365-441)||(19388469-19388546)
chr7 (368-436)||(31190756-31190825)
chr7 (352-473)||(15999886-16000008)
chr7 (352-473)||(24443603-24443724)
[»] chr3 (4 HSPs)
chr3 (352-471)||(15526658-15526777)
chr3 (352-471)||(11787491-11787611)
chr3 (352-471)||(25979006-25979126)
chr3 (352-422)||(28088120-28088192)
[»] chr5 (10 HSPs)
chr5 (352-474)||(20100518-20100641)
chr5 (352-473)||(7865710-7865831)
chr5 (352-473)||(12765270-12765391)
chr5 (352-473)||(5097555-5097677)
chr5 (352-473)||(12704154-12704275)
chr5 (352-473)||(39535368-39535490)
chr5 (352-473)||(9812013-9812134)
chr5 (353-473)||(31652060-31652181)
chr5 (352-474)||(26245006-26245129)
chr5 (352-436)||(26130006-26130091)
[»] scaffold0034 (1 HSPs)
scaffold0034 (353-473)||(83291-83412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (352-472)||(40265-40386)
[»] scaffold0376 (1 HSPs)
scaffold0376 (352-473)||(11806-11927)
[»] scaffold0063 (1 HSPs)
scaffold0063 (352-471)||(45226-45346)
[»] scaffold0086 (1 HSPs)
scaffold0086 (365-473)||(53682-53791)
[»] chr1 (2 HSPs)
chr1 (352-436)||(8727568-8727653)
chr1 (354-473)||(633840-633960)
[»] chr8 (3 HSPs)
chr8 (352-471)||(18835254-18835374)
chr8 (352-473)||(22659770-22659894)
chr8 (352-474)||(20539672-20539798)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 28741836 - 28741543
Alignment:
Q  9 acatcatcatgttaggtgaaactagaatctttgtcatgtgaagatacacaaggtagatgtttgatttactacaaatattttctgtctaaattaccagtgc 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741836 acatcatcatgttaggttaaactagaatctttgtcatgtgaagatacacaaggtagatgtttgatttactacaaatattttctgtctaaattaccagtgc 28741737  T
Q  109 atttctagataaaaaacttgacagggatatcttccaagatttggatatcaatcatggatgaatcccaattgacacataattgtggagaatctaatatcaa 208  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28741736 atttctagttaaaaaacttgacagggatatcttccaagatttggatatcaatcatggatgaatcacaattgacacataattgtggagaatctaatatcaa 28741637  T
Q  209 cgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgttttgagagatacagtt 302  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28741636 cgatgtttcattcaatgaatgaaattcaaagattagtatccgtagaattgatttaccaggaatccatgatgatcttgttttgagagatacagtt 28741543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 28733644 - 28733364
Alignment:
Q  9 acatcatcatgttaggtgaaactagaatctttgtcatgtgaagatacacaaggtagatgtttgatttactacaaatattttctgtctaaattaccagtgc 108  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||    
T  28733644 acatcatcatgttaggtgaaactagaatatttgtcatgtgaaggtacacaaggtagatgtatgctttactacaaatattttttgtctaaattatcagtgc 28733545  T
Q  109 atttctagataaaaaacttgacagggatatcttccaagatttggatatcaatcatggatgaatcccaattgacacataattgtggagaatctaatatcaa 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  28733544 atttctagataaataacttgacagggatatcttccaagatttgtatatcaatcatggatgaatcccaattgacacgtaattgtggataatctaatatcaa 28733445  T
Q  209 cgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgtttt 289  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28733444 cgatgtttcagtcaatgaataaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgtttt 28733364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 28717970 - 28717744
Alignment:
Q  13 catcatgttaggtgaaactagaatctttgtcatgtgaagatacacaaggtagatgtttgatttactacaaatattttctgtctaaattaccagtgcattt 112  Q
    |||||||||  ||||||||||||| ||| |||||||||| |||||||||||||||| || ||||||||||| | ||||  ||||||||| | ||||||||    
T  28717970 catcatgtttagtgaaactagaatatttttcatgtgaaggtacacaaggtagatgtatgctttactacaaagaatttccctctaaattatcggtgcattt 28717871  T
Q  113 -ctagataaaaaacttgacagggatatcttccaagatttggatatcaatcatggatgaatcccaattgacacataattgtggagaatctaatatcaacga 211  Q
     |||||| |||  |||||||||||||||||||||||| || |||| ||||||||||||||| ||||| || |||||||||||||||||||||| ||| ||    
T  28717870 tctagatgaaattcttgacagggatatcttccaagatatgtatattaatcatggatgaatctcaattaacgcataattgtggagaatctaataccaatga 28717771  T
Q  212 tgtttcattcaatgaatgaaattcaaa 238  Q
    ||||||| ||| ||||| |||||||||    
T  28717770 tgtttcagtcagtgaatcaaattcaaa 28717744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 28741377 - 28741301
Alignment:
Q  398 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgat 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28741377 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtatgtagactgatgat 28741301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 28670983 - 28670874
Alignment:
Q  187 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 286  Q
    |||||| | |||||||||||||  ||| |||| | ||||||| |||||||||| ||||| |||||| |||||| ||| ||||||||||||||||||||||    
T  28670983 attgtgaacaatctaatatcaatcatggttcagtaaatgaatcaaattcaaagcttagtgtccctacaattgacttaacaggaatccatgatgatcctgt 28670884  T
Q  287 tttgagagat 296  Q
    ||||||||||    
T  28670883 tttgagagat 28670874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 19616340 - 19616461
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||  ||| | ||||||| ||||||||| ||||||||||||| | || |||   ||    
T  19616340 tgacttaatcataagattacattaacataaagaacactattcttaaatgtatttgtagtcaagctttaatatgaattgggataata-ataagcgtcgaga 19616438  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||||||||    
T  19616439 ctattatgtatgtagactgatga 19616461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 28642400 - 28642291
Alignment:
Q  187 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 286  Q
    |||||| | |||||| |||||| ||||||||| | ||||||| |||||||||| | |||||||||| |||||| |||  ||||||||||||||||||||     
T  28642400 attgtgaacaatctagtatcaatgatgtttcagtgaatgaatcaaattcaaagctaagtatccctacaattgacttaaaaggaatccatgatgatcctgc 28642301  T
Q  287 tttgagagat 296  Q
    ||||||||||    
T  28642300 tttgagagat 28642291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 28675127 - 28675018
Alignment:
Q  187 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 286  Q
    |||||| | ||||||||||||| ||| | ||| ||| ||||| ||||| |||| |||| ||||||| |||||| ||| |||||||||| ||||||||| |    
T  28675127 attgtgaacaatctaatatcaatgatctctcaatcagtgaatcaaatttaaagcttagcatccctacaattgacttaacaggaatccacgatgatcctct 28675028  T
Q  287 tttgagagat 296  Q
    ||||||||||    
T  28675027 tttgagagat 28675018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 28691603 - 28691494
Alignment:
Q  187 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 286  Q
    |||||| | |||||| ||| || ||| ||||| ||||||| | |||||||||  |||||||||||| ||||||  || |||||||||||||||||| |||    
T  28691603 attgtgaacaatctagtatgaatgatttttcagtcaatgattcaaattcaaatgttagtatccctacaattgacctaacaggaatccatgatgatcttgt 28691504  T
Q  287 tttgagagat 296  Q
    ||||||||||    
T  28691503 tttgagagat 28691494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 28651261 - 28651152
Alignment:
Q  187 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 286  Q
    |||||| | ||||| |||||||| ||| | ||  || ||||| |||| ||||| |||||||||||| |||||| |||  ||||||||||||||||||||     
T  28651261 attgtgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgc 28651162  T
Q  287 tttgagagat 296  Q
    ||||||||||    
T  28651161 tttgagagat 28651152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 15342397 - 15342279
Alignment:
Q  356 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 454  Q
    ||||| || ||||||||||| |||||| |||||||||||| ||  ||| | |||||||  ||||||||||||||||||||||  ||| |||   ||||||    
T  15342397 ttaatcatgagattacattaccataaagaacactattctttaatgtatatgtagtcaagatttaatataaattgggataataataaagcgtggagactat 15342298  T
Q  455 tatgtgtgtagactgatga 473  Q
    ||||| |||||| ||||||    
T  15342297 tatgtatgtagattgatga 15342279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 28696488 - 28696379
Alignment:
Q  187 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 286  Q
    |||||| | |||||| |||||| ||||||||| ||||||| | |||||||||| | ||||||||   ||||||  || ||||||||||| |||||| |||    
T  28696488 attgtgaacaatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaccaattgacctaacaggaatccataatgatcttgt 28696389  T
Q  287 tttgagagat 296  Q
    ||||| ||||    
T  28696388 tttgaaagat 28696379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 21626586 - 21626670
Alignment:
Q  353 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 436  Q
    |||||||| || | |||||||||||||||| |||| ||||||||||| ||||   ||||||| ||||||||||| ||||||||||    
T  21626586 gacttaatcatgacattacattaacataaagaacaatattcttaaaagtatccgaagtcaaattttaatataaaatgggataata 21626670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 28719124 - 28719057
Alignment:
Q  406 tagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatga 473  Q
    |||||||  |||| ||||||||| |||||||  ||||||||  ||||||||||| |||||||||||||    
T  28719124 tagtcaagttttagtataaattgagataataataaaacgtagagactattatgtatgtagactgatga 28719057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 28741422 - 28741387
Alignment:
Q  301 ttattatgcttgttgtaagattaataaagagatagt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  28741422 ttattatacttgttgtaagattaataaagagatagt 28741387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 474
Target Start/End: Original strand, 29800419 - 29800494
Alignment:
Q  399 atatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgat 474  Q
    |||| |||| |||| |||||||| ||||||||||||||  ||| || |  ||||||||||| ||||||||||||||    
T  29800419 atatatatattcaagctttaatacaaattgggataataataaagcggaaagactattatgtatgtagactgatgat 29800494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 28717742 - 28717704
Alignment:
Q  257 tgatttaccaggaatccatgatgatcctgttttgagaga 295  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  28717742 tgatttactaggaatccatgatggtcctgttttgagaga 28717704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 30040872 - 30040750
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||||| |||||||||||||  ||| | |   ||    
T  30040872 tgacttaatcatgagattacattaacataaagaacactattcttaaatgtatctatagtcaagcgttaatatgaattgggataataataaagcatcgaga 30040773  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| | |||||||||||    
T  30040772 ctattatgtatatagactgatga 30040750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 473
Target Start/End: Original strand, 11420924 - 11421042
Alignment:
Q  356 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 454  Q
    ||||| || |||||||||||||||||| ||| |||||||||||  ||||  ||||||||||||||||| |||| ||||||||  ||| | |   ||||||    
T  11420924 ttaatcattagattacattaacataaagaacgctattcttaaatgtatccgtagtcaaactttaatatgaattaggataataataaagcttcgagactat 11421023  T
Q  455 tatgtgtgtagactgatga 473  Q
    ||||| |||||||||||||    
T  11421024 tatgtatgtagactgatga 11421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 19365423 - 19365508
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 436  Q
    ||||||||| || ||||||||||||| |||| ||| |||||||||||  ||||  ||||||| ||||||||||||||||| |||||    
T  19365423 tgacttaatcatgagattacattaacgtaaagaacgctattcttaaatgtatccgtagtcaagctttaatataaattggggtaata 19365508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 459
Target Start/End: Original strand, 9537881 - 9537973
Alignment:
Q  368 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgt 459  Q
    ||||||||||||||| ||| |||||||||||  ||| | |||||||  |||||||||| ||||||||| |  |||||| || |||||||||||    
T  9537881 ttacattaacataaagaacgctattcttaaatgtatatgtagtcaatatttaatataatttgggataacaataaaacgcatagactattatgt 9537973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 23846767 - 23846700
Alignment:
Q  370 acattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 436  Q
    ||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23846767 acatttacataaagaacactattcttaaaagtatctgtagtcaaactttaatataaattgggataata 23846700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 20736726 - 20736604
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || |||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||  || ||||||||||  ||| |||   ||    
T  20736726 tgacttaatcatgagattacattaacataaagaacattattcttaaatgtatctgtagtcaagctttaataagaactgggataataataaagcgtcgaga 20736627  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||||||||    
T  20736626 ctattatgtatgtagactgatga 20736604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 21994492 - 21994614
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || |||||||||||| ||||| |||||||||||||||  |||| |||||| | |||||||||||||||| ||||||  ||| || |  ||    
T  21994492 tgacttaatcatgagattacattaatataaagaacactattcttaaatgtatccatagtcgagctttaatataaattggaataataataaagcgcaaaga 21994591  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||| | |||||||||||||    
T  21994592 ctattatatatgtagactgatga 21994614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 4073480 - 4073595
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||||   ||| |||| ||||||||||| ||||  |||||||||||||||||||||  ||||||||  ||||||||  ||    
T  4073480 tgacttaatcatgagattacattaatggaaagaacattattcttaaaagtatccgtagtcaaactttaatataaatcaggataataataaaacgtagaga 4073579  T
Q  451 ctattatgtgtgtaga 466  Q
    ||||||||| ||||||    
T  4073580 ctattatgtttgtaga 4073595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 8612820 - 8612941
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  8612820 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 8612918  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||||||||    
T  8612919 ctattatgtatgtagactgatga 8612941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 22560533 - 22560460
Alignment:
Q  400 tatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatga 473  Q
    |||| |||||||| |||||||||||||||||||||||  ||| || |  ||||||||||  ||||||| |||||    
T  22560533 tatccatagtcaagctttaatataaattgggataataataaagcgcagagactattatgcatgtagaccgatga 22560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 13343 - 13225
Alignment:
Q  356 ttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 454  Q
    ||||| || |||||||||||||||||||| || ||||||||||  |||| |||||||| ||||||||| |||||||||||||  ||| |||   ||||||    
T  13343 ttaatcatgagattacattaacataaaaaacagtattcttaaatgtatccatagtcaagctttaatattaattgggataataataaagcgtcgagactat 13244  T
Q  455 tatgtgtgtagactgatga 473  Q
    ||||| ||||||| |||||    
T  13243 tatgtatgtagaccgatga 13225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 474
Target Start/End: Original strand, 8636 - 8758
Alignment:
Q  353 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 451  Q
    |||||||| || |||||||||||||||||| |||||||||||||||| ||| | |||||||  |||||||||||||| |||| ||  ||| ||||  |||    
T  8636 gacttaatcatgagattacattaacataaagaacactattcttaaaagtatttgtagtcaagttttaatataaattgagatagtaataaagcgtagagac 8735  T
Q  452 tattatgtgtgtagactgatgat 474  Q
    || ||||| |||||| |||||||    
T  8736 taatatgtatgtagattgatgat 8758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 3587813 - 3587935
Alignment:
Q  352 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||| |||||||||||| |  ||||||||||   |||||||||||| |||||||||||||||||||||||  ||| ||||  ||    
T  3587813 tgacttaatcatgagattactttaacataaaaaacgttattcttaaatgaatctatagtcaagctttaatataaattgggataataataaagcgtagaga 3587912  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| | ||||| |||||    
T  3587913 ctattatgtatatagaccgatga 3587935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 471
Target Start/End: Complemental strand, 15170428 - 15170307
Alignment:
Q  353 gacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatata--aattgggataatataaaaacgtattg 449  Q
    |||||||| || |||||||||||||||||||| |  |||||||||| |||| | ||||||| ||||||||||  |||||||||||||  ||| ||||  |    
T  15170428 gacttaatcatgagattacattaacataaaaaacgttattcttaaatatatttgtagtcaagctttaatatataaattgggataataataaagcgtagag 15170329  T
Q  450 actattatgtgtgtagactgat 471  Q
    |||||||| | |||||||||||    
T  15170328 actattatatatgtagactgat 15170307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 19393822 - 19393700
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || |||||||||||||||||| ||  |||||||||||  ||||| ||||||| ||||||||| | ||||||||||   ||| |||   ||    
T  19393822 tgacttaatcatgagattacattaacataaagaatgctattcttaaatgtatctgtagtcaagctttaatatgagttgggataattataaagcgtcgaga 19393723  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||| ||||    
T  19393722 ctattatgtatgtagactaatga 19393700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 28130465 - 28130587
Alignment:
Q  352 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||||| | |||||||||||  ||||| ||||||| ||||||||| |||  ||||||||  ||| |||   ||    
T  28130465 tgacttaatcatgagattacattatcataaaaaacgctattcttaaatgtatctgtagtcaagctttaatatgaataaggataataataaagcgtcgaga 28130564  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||  |||||||||||||    
T  28130565 ctattatgcatgtagactgatga 28130587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 18259522 - 18259437
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 436  Q
    ||||||||| || ||||||||||| |||||| |||| ||||||||||  |||| |||||||| ||||||||| |||| ||||||||    
T  18259522 tgacttaatcatgagattacattatcataaagaacattattcttaaatgtatccatagtcaagctttaatatgaattaggataata 18259437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 47167257 - 47167135
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    |||||| || || ||||||||||| |||||| |||  ||||||||||  ||| | ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  47167257 tgactttatcatgagattacattatcataaagaacgttattcttaaatgtatttgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 47167158  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||||||||    
T  47167157 ctattatgtatgtagactgatga 47167135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 2935935 - 2936020
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 436  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||||  ||||||| ||||||||| ||||| |||||||    
T  2935935 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatccgtagtcaagctttaatatgaattgcgataata 2936020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 19388469 - 19388546
Alignment:
Q  365 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaa 441  Q
    ||||||||| || ||||| ||||||||| |||| | ||||| ||||||| ||| ||||||||||||||||||| ||||    
T  19388469 agattacatcaatataaagaacactatttttaatagtatctgtagtcaagcttaaatataaattgggataataaaaaa 19388546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 436
Target Start/End: Complemental strand, 31190825 - 31190756
Alignment:
Q  368 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 436  Q
    ||||||||||||||| |||| |||| ||||| |||||  ||||||| ||||| |||||||||||||||||    
T  31190825 ttacattaacataaataacattattattaaatatatccttagtcaagctttagtataaattgggataata 31190756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 15999886 - 16000008
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| | |||| ||| ||||| |||||  ||||  ||||||||||||||||| |||| ||||||||  ||| |||   ||    
T  15999886 tgacttaatcatgagattacattaccttaaagaacgctattattaaatgtatccttagtcaaactttaatatgaattaggataataataaagcgtcgaga 15999985  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    || |||||| || ||||||||||    
T  15999986 cttttatgtatgcagactgatga 16000008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 24443724 - 24443603
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| |  |||||||||||||||||| |||  ||||||||||  ||||  ||| ||| ||||||||||||| ||||| |||  |||  |||  ||    
T  24443724 tgacttaatcacgagattacattaacataaagaacgatattcttaaatgtatccgtagccaagctttaatataaat-gggatgataacaaagtgtaaaga 24443626  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||||||||    
T  24443625 ctattatgtatgtagactgatga 24443603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 471
Target Start/End: Original strand, 15526658 - 15526777
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||   || | ||||||| |||||||||||| || |||||||  ||| ||||  ||    
T  15526658 tgacttaatcatgagattacattaacataaagaacactattcttaaatgcatatgtagtcaagctttaatataaa-tgagataataataaagcgtagaga 15526756  T
Q  451 ctattatgtgtgtagactgat 471  Q
    ||||||||| |||||||||||    
T  15526757 ctattatgtttgtagactgat 15526777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 471
Target Start/End: Original strand, 11787491 - 11787611
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| |||  ||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  11787491 tgacttaatcatgagattacattatcataaagaacgttattcttaaatgtatctgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 11787590  T
Q  451 ctattatgtgtgtagactgat 471  Q
    ||||||||| ||| |||||||    
T  11787591 ctattatgtatgttgactgat 11787611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 471
Target Start/End: Complemental strand, 25979126 - 25979006
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  25979126 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 25979027  T
Q  451 ctattatgtgtgtagactgat 471  Q
    ||||||||| ||| |||||||    
T  25979026 ctattatgtatgttgactgat 25979006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 28088120 - 28088192
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatat 422  Q
    ||||||||| || ||||||||||| |||||| ||||||||||||||| | |||  |||||||| |||||||||    
T  28088120 tgacttaatcatgagattacattatcataaagaacactattcttaaatagatccgtagtcaaagctttaatat 28088192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 20100641 - 20100518
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||||| |||| |||  ||||||||||  |||   |||| ||||||||||||||||||||||||||  ||| |||   ||    
T  20100641 tgacttaatcatgagattacattaacgtaaataacgttattcttaaatgtattcgtagttaaactttaatataaattgggataataataaagcgtcacga 20100542  T
Q  451 ctattatgtgtgtagactgatgat 474  Q
    ||||||||| ||||||||||||||    
T  20100541 ctattatgtatgtagactgatgat 20100518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 7865831 - 7865710
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  7865831 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 7865733  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||||||||    
T  7865732 ctattatgtatgtagactgatga 7865710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 12765391 - 12765270
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  12765391 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 12765293  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||||||||    
T  12765292 ctattatgtatgtagactgatga 12765270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 5097555 - 5097677
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||| | |||||||  |||||||| |||| ||||||||  ||| |||   ||    
T  5097555 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatttgtagtcaagttttaatatgaattaggataataataaagcgtcgaga 5097654  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||||||||    
T  5097655 ctattatgtatgtagactgatga 5097677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 12704275 - 12704154
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  12704275 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 12704177  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||| ||||| |||||||||||||    
T  12704176 ctactatgtatgtagactgatga 12704154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 39535368 - 39535490
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| | |||| |||  ||||||||||  ||||  || |||||||||||||| |||||||||||||  ||| |||   ||    
T  39535368 tgacttaatcatgagattacattaccttaaagaacgatattcttaaatgtatccgtactcaaactttaatatgaattgggataataataaagcgtcaaga 39535467  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||||||||||    
T  39535468 ctattatgtatgtagactgatga 39535490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 9812134 - 9812013
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| ||||||||| |||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  9812134 tgacttaatcatgagattacattatcataaagaacactattattaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 9812036  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||| ||||| |||||||||||||    
T  9812035 ctactatgtatgtagactgatga 9812013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 473
Target Start/End: Complemental strand, 31652181 - 31652060
Alignment:
Q  353 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 451  Q
    ||||||||  |||||||||||||||||||| || | ||||||||||| | || || ||| | ||||| ||||||||| || ||||  ||||| ||  |||    
T  31652181 gacttaatcgtaagattacattaacataaagaatattattcttaaaagtttccatggtcgagctttattataaattgagacaatagtaaaacatagagac 31652082  T
Q  452 tattatgtgtgtagactgatga 473  Q
    || ||||| |||||||||||||    
T  31652081 tactatgtatgtagactgatga 31652060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 474
Target Start/End: Original strand, 26245006 - 26245129
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| ||   ||||||||||  ||||| || |||| ||||||||| |||  ||||||||  ||| |||   ||    
T  26245006 tgacttaatcatgagattacattatcataaagaatgttattcttaaatgtatctgtaatcaagctttaatatgaataaggataataataaagcgtcgaga 26245105  T
Q  451 ctattatgtgtgtagactgatgat 474  Q
    ||||||||| ||||||||||||||    
T  26245106 ctattatgtatgtagactgatgat 26245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 26130091 - 26130006
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 436  Q
    |||||||||  ||| ||||| ||||||| || ||| || ||||||||  ||||  ||||||| |||||||||||||||||||||||    
T  26130091 tgacttaatcctaatattactttaacattaagaacgctcttcttaaatgtatccgtagtcaagctttaatataaattgggataata 26130006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 473
Target Start/End: Complemental strand, 83412 - 83291
Alignment:
Q  353 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 451  Q
    ||||||||| | |||||| ||| ||| ||| || ||||||||||||| ||||  ||||| || |||||||||||||| |||||||  |||  |||| |||    
T  83412 gacttaattgtgagattaaattcacacaaagaatactattcttaaaagtatccgtagtcgaaatttaatataaattgagataataataaagtgtatagac 83313  T
Q  452 tattatgtgtgtagactgatga 473  Q
    |||||||| |||||||||||||    
T  83312 tattatgtatgtagactgatga 83291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 472
Target Start/End: Complemental strand, 40386 - 40265
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||| ||||||||| |||| ||| |||||||||||  |||| |||||||| ||||||||||||||| |||||||  ||| ||    ||    
T  40386 tgacttaatcatgagaatacattaacgtaaagaacgctattcttaaatgtatccatagtcaagctttaatataaattgagataataataaagcgccgaga 40287  T
Q  451 ctattatgtgtgtagactgatg 472  Q
    ||||||||| ||||||||||||    
T  40286 ctattatgtatgtagactgatg 40265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 11927 - 11806
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||    |    
T  11927 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatctgtagtcaatctttaatat-aattaggataataataaagcgtcgaaa 11829  T
Q  451 ctattatgtgtgtagactgatga 473  Q
    ||||||||| |||||| ||||||    
T  11828 ctattatgtatgtagattgatga 11806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 471
Target Start/End: Complemental strand, 45346 - 45226
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  45346 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatattaattaggataataataaagcgtcgaga 45247  T
Q  451 ctattatgtgtgtagactgat 471  Q
    ||||||||| ||| |||||||    
T  45246 ctattatgtatgttgactgat 45226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 473
Target Start/End: Original strand, 53682 - 53791
Alignment:
Q  365 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgt 463  Q
    |||||||||||||||||| |||||||||||||||  ||||  || |||| ||||||||| |||| ||||||||  |||  ||   ||||||||||| |||    
T  53682 agattacattaacataaagaacactattcttaaatgtatccgtattcaagctttaatatgaattaggataataataaagtgtcaagactattatgtatgt 53781  T
Q  464 agactgatga 473  Q
    ||| ||||||    
T  53782 agattgatga 53791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 8727568 - 8727653
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 436  Q
    ||||| ||| |||||||||| |||||||||| |||  |||||| |||  ||||| ||||||||||||||||| ||||| |||||||    
T  8727568 tgactaaatcataagattactttaacataaagaacgttattctgaaatctatctgtagtcaaactttaatatgaattgagataata 8727653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 473
Target Start/End: Original strand, 633840 - 633960
Alignment:
Q  354 acttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgact 452  Q
    ||||||| || |||||| |||| |||||| |||| |||| |||||  ||||  ||||||| ||||||||| |||  ||||||||  ||| |||   ||||    
T  633840 acttaatcatgagattaaattatcataaagaacattatttttaaatgtatccgtagtcaagctttaatatgaataaggataataacaaagcgtcgagact 633939  T
Q  453 attatgtgtgtagactgatga 473  Q
    ||||||| |||||||||||||    
T  633940 attatgtatgtagactgatga 633960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 471
Target Start/End: Original strand, 18835254 - 18835374
Alignment:
Q  352 tgacttaattataagattacattaacat-aaaaacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 450  Q
    ||||||||| || ||||||||||||||| ||||||  |||||||||| |||||| ||||| | |||||||||  ||||  ||||||  ||| | |   ||    
T  18835254 tgacttaatcatgagattacattaacataaaaaacgttattcttaaatatatctgtagtccagctttaatatggattgaaataataataaagcatcgaga 18835353  T
Q  451 ctattatgtgtgtagactgat 471  Q
    ||||||||| |||||||||||    
T  18835354 ctattatgtatgtagactgat 18835374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 22659894 - 22659770
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaat-tgggataatataaaaacgtatt 448  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||       
T  22659894 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaaagctttaatatgaataaaggataataataaagcgtcaa 22659795  T
Q  449 gactattatgtgtgtagactgatga 473  Q
    ||||||||||| |||||||||||||    
T  22659794 gactattatgtatgtagactgatga 22659770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 20539798 - 20539672
Alignment:
Q  352 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata-taaaaa--cgtat 447  Q
    ||||||||| ||  ||||||||||||||||| |||  |||||||||| | || | |||| || ||||||| ||||||||||||||| ||| ||  || ||    
T  20539798 tgacttaatcatgtgattacattaacataaagaacgttattcttaaatacatttgtagtaaagctttaatgtaaattgggataataataataaagcgcat 20539699  T
Q  448 tgactattatgtgtgtagactgatgat 474  Q
     ||| ||||||| ||||||||||||||    
T  20539698 agacgattatgtatgtagactgatgat 20539672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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