View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_high_102 (Length: 292)

Name: NF18178_high_102
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_high_102
NF18178_high_102
[»] chr8 (3 HSPs)
chr8 (10-277)||(5087975-5088249)
chr8 (1-42)||(10727451-10727492)
chr8 (1-50)||(12361293-12361342)
[»] chr6 (2 HSPs)
chr6 (1-51)||(29249491-29249541)
chr6 (133-172)||(1432483-1432523)
[»] chr7 (2 HSPs)
chr7 (1-51)||(389936-389986)
chr7 (4-44)||(3019888-3019928)
[»] chr5 (1 HSPs)
chr5 (119-170)||(6725118-6725170)
[»] chr4 (2 HSPs)
chr4 (4-44)||(23676933-23676973)
chr4 (119-170)||(33640989-33641041)
[»] chr2 (1 HSPs)
chr2 (1-29)||(30331871-30331899)
[»] chr1 (1 HSPs)
chr1 (1-29)||(26866433-26866461)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 5088249 - 5087975
Alignment:
Q  10 cttatttcagcttatctacttctataagtacttgtaagactgcttatagagaagcaatttggctttattttatctt-----ataccaatagtttattagt 104  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  5088249 cttatctcagcttatctacttctataaatacttgtaagactacttatagagaagcaatttggctttattttatctttagttataccaatagtttattagt 5088150  T
Q  105 ttagatataagccctatatgataagaaattatgctataagcacttattaagctatttatccaaacatgactaatataaagaaaattcttgttaccggcat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5088149 ttagatataagccctatatgataagaaattatgctataagcacttattaagctatttatccaaacatgactaatataaagaaaattcttgttaccggcat 5088050  T
Q  205 aatt--nnnnnnnnggactagaatttccaagagaaaccaaacaaaagaaccaaaattacttcataagacataaat 277  Q
    ||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5088049 aattaaaaaaaaaaggactagaatttccaagagaaaccaaacaaaagaaccaaaattacttcataagacataaat 5087975  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10727492 - 10727451
Alignment:
Q  1 ttggattgacttatttcagcttatctacttctataagtactt 42  Q
    |||||||||||||||| || |||||||||| |||||||||||    
T  10727492 ttggattgacttatttgagtttatctacttgtataagtactt 10727451  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12361342 - 12361293
Alignment:
Q  1 ttggattgacttatttcagcttatctacttctataagtacttgtaagact 50  Q
    |||||||||||||||| | ||||||||||  ||||||||||||| |||||    
T  12361342 ttggattgacttatttgaacttatctactgatataagtacttgttagact 12361293  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29249541 - 29249491
Alignment:
Q  1 ttggattgacttatttcagcttatctacttctataagtacttgtaagactg 51  Q
    |||||||||||||||| ||||||| ||||  ||||||||||||||||||||    
T  29249541 ttggattgacttatttgagcttatttactgttataagtacttgtaagactg 29249491  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 1432523 - 1432483
Alignment:
Q  133 ttatgctataagcactta-ttaagctatttatccaaacatg 172  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  1432523 ttatgctataagcacttaattaagctagttatccaaacatg 1432483  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 389986 - 389936
Alignment:
Q  1 ttggattgacttatttcagcttatctacttctataagtacttgtaagactg 51  Q
    |||||||| ||||||| ||| |||||||||| |||||||||||| ||||||    
T  389986 ttggattggcttatttgagcctatctacttccataagtacttgtgagactg 389936  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 3019928 - 3019888
Alignment:
Q  4 gattgacttatttcagcttatctacttctataagtacttgt 44  Q
    ||||||||||||| ||||||||||||  |||||||||||||    
T  3019928 gattgacttatttgagcttatctactagtataagtacttgt 3019888  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 6725170 - 6725118
Alignment:
Q  119 tatatgataagaaattatgctataagcactt-attaagctatttatccaaaca 170  Q
    ||||||||||| | ||||||||||||||||| |||||  ||||||||||||||    
T  6725170 tatatgataagcacttatgctataagcacttaattaaattatttatccaaaca 6725118  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 23676933 - 23676973
Alignment:
Q  4 gattgacttatttcagcttatctacttctataagtacttgt 44  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  23676933 gattgacttatttgaacttatctacttgtataagtacttgt 23676973  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 33641041 - 33640989
Alignment:
Q  119 tatatgataagaaattatgctataagcactt-attaagctatttatccaaaca 170  Q
    |||||||||||  ||||| |||||||||||| |||||||| ||||||||||||    
T  33641041 tatatgataagcgattattctataagcacttaattaagctgtttatccaaaca 33640989  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30331899 - 30331871
Alignment:
Q  1 ttggattgacttatttcagcttatctact 29  Q
    |||||||||||||||||||||||||||||    
T  30331899 ttggattgacttatttcagcttatctact 30331871  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26866461 - 26866433
Alignment:
Q  1 ttggattgacttatttcagcttatctact 29  Q
    |||||||||||||||||||||||||||||    
T  26866461 ttggattgacttatttcagcttatctact 26866433  T

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