View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_high_104 (Length: 283)

Name: NF18178_high_104
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_high_104
NF18178_high_104
[»] chr3 (9 HSPs)
chr3 (11-267)||(5374885-5375141)
chr3 (122-267)||(5363115-5363260)
chr3 (122-267)||(5368331-5368476)
chr3 (110-267)||(5369143-5369306)
chr3 (109-267)||(5356470-5356631)
chr3 (42-82)||(5363276-5363316)
chr3 (42-79)||(5368495-5368532)
chr3 (131-192)||(7126688-7126749)
chr3 (123-199)||(7178718-7178794)
[»] chr6 (2 HSPs)
chr6 (131-198)||(33839541-33839608)
chr6 (131-191)||(33843461-33843521)
[»] chr8 (1 HSPs)
chr8 (127-216)||(30054498-30054587)
[»] chr7 (1 HSPs)
chr7 (131-196)||(44500709-44500774)
[»] chr4 (1 HSPs)
chr4 (131-192)||(36590659-36590720)
[»] scaffold0210 (1 HSPs)
scaffold0210 (131-191)||(15608-15668)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 5375141 - 5374885
Alignment:
Q  11 caaaggagagaacctatcgaaggaaagaaggatagttatatattttagacaaaatttatatataaagaaacggaaaatacaagcaattgaagaacaaaat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5375141 caaaggagagaacctatcgaaggaaagaaggatagttatatattttagacaaaatttatatataaagaaacgaaaaatacaagcaattgaagaacaaaat 5375042  T
Q  111 ataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375041 ataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatc 5374942  T
Q  211 ctcttcgacccatctgatgtcttctacatcaatgtataagtgtgtaatagaacaagg 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374941 ctcttcgacccatctgatgtcttctacatcaatgtataagtgtgtaatagaacaagg 5374885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 5363260 - 5363115
Alignment:
Q  122 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5363260 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcaagcagccagctgagtagggttgcagaatcctcttcgaccc 5363161  T
Q  222 atctgatgtcttctacatcaatgtataagtgtgtaatagaacaagg 267  Q
    | ||||||||||||||||||||||||||||||||||||||||||||    
T  5363160 agctgatgtcttctacatcaatgtataagtgtgtaatagaacaagg 5363115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 5368476 - 5368331
Alignment:
Q  122 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5368476 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcgagcagccagctgagtagggttgcagaatcctcttcgaccc 5368377  T
Q  222 atctgatgtcttctacatcaatgtataagtgtgtaatagaacaagg 267  Q
    | ||||||||||||||||||||||||||||||||||||||||||||    
T  5368376 agctgatgtcttctacatcaatgtataagtgtgtaatagaacaagg 5368331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 5369306 - 5369143
Alignment:
Q  110 tataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctg---aatagggttgcag 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||   | ||||  |||||    
T  5369306 tataaatataacggcctcaaaacctgaagagtattagaagagactgtcaatgatttgatattagcaagctcttgcagccagctgatcagtaggactgcag 5369207  T
Q  207 aatcctcttcgacccatc---tgatgtcttctacatcaatgtataagtgtgtaatagaacaagg 267  Q
    ||||||||| |||  | |   ||||||||||| ||| |||| ||||||||||||||||||||||    
T  5369206 aatcctctttgacgaagccgatgatgtcttctgcatgaatgcataagtgtgtaatagaacaagg 5369143  T

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Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 5356631 - 5356470
Alignment:
Q  109 atataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaa 208  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||  |||||||    
T  5356631 atataaatatagcagcctcaaaacctgaagagtattagaagagactgtcaatgattttatattggcaagctctagcagccagctgagtaggactgcagaa 5356532  T
Q  209 tcctcttcgacccatc---tgatgtcttctacatcaatgtataagtgtgtaatagaacaagg 267  Q
    ||||||| |||  | |    |||||||||| ||| ||  |||||||||||||||||||||||    
T  5356531 tcctctttgacgaagccgacgatgtcttctgcattaacatataagtgtgtaatagaacaagg 5356470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 5363316 - 5363276
Alignment:
Q  42 atagttatatattttagacaaaatttatatataaagaaacg 82  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  5363316 atagttatacattttagacaaaatttatatataaagaaacg 5363276  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 5368532 - 5368495
Alignment:
Q  42 atagttatatattttagacaaaatttatatataaagaa 79  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  5368532 atagttatacattttagaccaaatttatatataaagaa 5368495  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 7126749 - 7126688
Alignment:
Q  131 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct 192  Q
    |||||||||||||| |||||||| || |||| |||| ||| |||||||||| ||| ||||||    
T  7126749 acctgaagagtattcgaagagacggtcaatgttttggtatcagcaagctcttgcaaccagct 7126688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 7178794 - 7178718
Alignment:
Q  123 gcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagg 199  Q
    |||| ||||||||||||||| || ||||||  || |||||| |||||||||||| ||| || |||||| ||| ||||    
T  7178794 gccttaaaacctgaagagtactataagagatcgtcaatgatgtgatattagcaaactcgagaagccagttgagtagg 7178718  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 33839541 - 33839608
Alignment:
Q  131 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatag 198  Q
    |||||||||||| | |||||||||||||||||||  || |||||||| ||||||||||||||||||||    
T  33839541 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatag 33839608  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 33843461 - 33843521
Alignment:
Q  131 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc 191  Q
    ||||||||||| || |||| ||||||||||||||  |  |||||||| |||||||||||||    
T  33843461 acctgaagagtttttgaagtgactgttaatgattctaagttagcaaggtctagcagccagc 33843521  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 30054498 - 30054587
Alignment:
Q  127 caaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttc 216  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||| || || ||| |||||| ||| ||||  |||||| || |||||    
T  30054498 caaaacctgaagagtatcagaagagacagtcaatgatttgatattagaaaactgtagtagccagttgagtaggactgcagattcgtcttc 30054587  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 44500709 - 44500774
Alignment:
Q  131 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaat 196  Q
    |||||||||||| | | |||||| || |||||||| || |||||||||||||| ||||||||||||    
T  44500709 acctgaagagtagttgtagagaccgtcaatgattttatgttagcaagctctagtagccagctgaat 44500774  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 36590659 - 36590720
Alignment:
Q  131 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct 192  Q
    |||||||||||| | | |||||| || |||||||||||||||||||| |||| |||||||||    
T  36590659 acctgaagagtactcgcagagaccgtcaatgatttgatattagcaagttctaacagccagct 36590720  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 15608 - 15668
Alignment:
Q  131 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc 191  Q
    |||||||||||| | |||| |||||| ||||||||||||||||  ||||| | ||||||||    
T  15608 acctgaagagtacttgaagggactgtcaatgatttgatattagtgagctcgaccagccagc 15668  T

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