View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_high_105 (Length: 283)

Name: NF18178_high_105
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_high_105
NF18178_high_105
[»] chr4 (2 HSPs)
chr4 (1-267)||(1013197-1013463)
chr4 (29-81)||(17978321-17978373)
[»] chr3 (3 HSPs)
chr3 (9-116)||(49144755-49144862)
chr3 (43-116)||(20313382-20313455)
chr3 (2-81)||(42144428-42144508)
[»] chr7 (7 HSPs)
chr7 (9-135)||(47799258-47799384)
chr7 (10-97)||(6900-6987)
chr7 (43-97)||(48955193-48955247)
chr7 (12-87)||(27132173-27132248)
chr7 (66-114)||(29006373-29006421)
chr7 (66-114)||(29007173-29007221)
chr7 (29-81)||(34368153-34368205)
[»] chr6 (1 HSPs)
chr6 (2-116)||(21983214-21983329)
[»] chr8 (2 HSPs)
chr8 (14-112)||(42112454-42112552)
chr8 (2-81)||(28091434-28091514)
[»] chr1 (5 HSPs)
chr1 (17-140)||(14285832-14285955)
chr1 (11-97)||(42645372-42645458)
chr1 (2-81)||(1013381-1013461)
chr1 (8-140)||(30466871-30467003)
chr1 (69-117)||(37423053-37423101)
[»] chr5 (3 HSPs)
chr5 (43-116)||(43588316-43588389)
chr5 (11-140)||(4608508-4608638)
chr5 (43-97)||(5766815-5766869)
[»] chr2 (3 HSPs)
chr2 (8-97)||(2501800-2501892)
chr2 (29-81)||(2992060-2992112)
chr2 (92-140)||(5278324-5278372)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 1013463 - 1013197
Alignment:
Q  1 ttgtgtgaaattccagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1013463 ttgtgtgaaattccagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttccta 1013364  T
Q  101 tggtgggaaaaaactttactgtcccaggttaaatgtcaccgtgaaaatatgatatctttctgttatgtctcatgcctatttatagccaaggaggtcttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1013363 tggtgggaaaaaactttactgtcccaggttaaatgtcaccgtgaaaatatgatatctttctgttatgtctcatgcctatttatagccaaggaggtcttta 1013264  T
Q  201 ccctttaacactcaattatattagatgaccatccatattccatattacaaaatagcaacgtatataa 267  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1013263 ctctttaacactcaattatattagatgaccatccatattccatattacaaaatagcaacgtatataa 1013197  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 17978373 - 17978321
Alignment:
Q  29 aataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatgg 81  Q
    |||| |||||||| |||||||| ||| || |||||| ||||||||||||||||    
T  17978373 aatattgtatagatagaccatgataaaattaatacacctctttaatctaatgg 17978321  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 49144862 - 49144755
Alignment:
Q  9 aattccagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtggga 108  Q
    ||||| |||||||||||||||||||||| |||| |||||||| || |||||||||| ||||||||||||||| ||||||| |||||||  |||| |||||    
T  49144862 aattctagatctagaggatgaataatgtgtagatagaccatgatatgatcaatacacctctttaatctaatgataaaaattcaacttttctatgttggga 49144763  T
Q  109 aaaaactt 116  Q
    ||||||||    
T  49144762 aaaaactt 49144755  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 20313382 - 20313455
Alignment:
Q  43 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactt 116  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||| ||||  ||| |||||||| ||||    
T  20313382 agaccattataagatcaatacacctctttaatctaatggtaaaaatccaattttcccatgatgggaaaatactt 20313455  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 42144508 - 42144428
Alignment:
Q  2 tgtgtgaaattccagatct-agaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatgg 81  Q
    ||||| ||||||||||||| ||||||||||||| |||| |   ||||||| ||||||||||||| ||| ||||||||||||    
T  42144508 tgtgtaaaattccagatcttagaggatgaataaagtatgggtggaccatgataagatcaatacacctcattaatctaatgg 42144428  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 47799384 - 47799258
Alignment:
Q  9 aattccagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtggga 108  Q
    ||||| ||||||| ||||||||||| ||  ||  |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||  ||| |||||    
T  47799384 aattctagatctaaaggatgaataaagtgcaggtagaccatgataagatcaatacacctctttaatctaatggtaaaaatcaaactttcccatgatggga 47799285  T
Q  109 aaaaactttactgtcccaggttaaatg 135  Q
    |||||||| |||  |||||| ||||||    
T  47799284 aaaaacttcacttacccaggctaaatg 47799258  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 6987 - 6900
Alignment:
Q  10 attccagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttc 97  Q
    |||| ||||||||| ||||||||  ||| ||  |||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  6987 attctagatctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaatggtgaaaatccaactttc 6900  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 48955193 - 48955247
Alignment:
Q  43 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttc 97  Q
    |||||||  ||||||||||||| ||||||||||| |||||||||||| |||||||    
T  48955193 agaccattataagatcaatacacctctttaatctgatggtaaaaatcaaactttc 48955247  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 27132173 - 27132248
Alignment:
Q  12 tccagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaa 87  Q
    |||||| ||||| |||||||||  || ||| |||||||| ||||| || |||| | ||||||||||||||||||||    
T  27132173 tccagagctagatgatgaataaaatacagatagaccatgataagaccagtacaccactttaatctaatggtaaaaa 27132248  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 29006421 - 29006373
Alignment:
Q  66 ctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaac 114  Q
    ||||||||||||||||| |||| | |||||||  |||||||||||||||    
T  29006421 ctctttaatctaatggttaaaaactaactttcccatggtgggaaaaaac 29006373  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 29007173 - 29007221
Alignment:
Q  66 ctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaac 114  Q
    ||||||||||||||||| |||| | |||||||  |||||||||||||||    
T  29007173 ctctttaatctaatggttaaaaactaactttcccatggtgggaaaaaac 29007221  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 34368153 - 34368205
Alignment:
Q  29 aataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatgg 81  Q
    |||| |||||||| |||||||| ||| || |||||| ||||||||||||||||    
T  34368153 aatattgtatagatagaccatgataaaattaatacacctctttaatctaatgg 34368205  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 21983214 - 21983329
Alignment:
Q  2 tgtgtgaaattccagatcta-gaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttctta 100  Q
    ||||| |||||||| ||||| ||||||||||||  |||||  |||||||| ||||||||||||| |||||||||||||||||| |||| ||| ||||  |    
T  21983214 tgtgtaaaattccatatctatgaggatgaataaaatataggtagaccatgataagatcaatacacctctttaatctaatggtagaaattcaaatttccca 21983313  T
Q  101 tggtgggaaaaaactt 116  Q
    || |||||||||||||    
T  21983314 tgatgggaaaaaactt 21983329  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 42112454 - 42112552
Alignment:
Q  14 cagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaa 112  Q
    |||||||||| ||||||||| ||||||  |||||||||||||||||||||| |||||||||||| |||||||| |  |||||||  ||||||| |||||    
T  42112454 cagatctagatgatgaataaagtataggtagaccatggtaagatcaatacacctctttaatctattggtaaaattttaactttcccatggtggaaaaaa 42112552  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 28091514 - 28091434
Alignment:
Q  2 tgtgtgaaattccagatct-agaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatgg 81  Q
    ||||| ||||||||||||| ||||||||||||| |||| |   ||||||| ||||||||||||| ||| ||||| ||||||    
T  28091514 tgtgtaaaattccagatcttagaggatgaataaagtatgggtggaccatgataagatcaatacacctcattaatttaatgg 28091434  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 14285832 - 14285955
Alignment:
Q  17 atctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactt 116  Q
    ||||||||||||| ||| ||||||  |||||||| |||| |||||||| || |||||||||||||||||||||  |||||   || |||||||| |||||    
T  14285832 atctagaggatgattaaagtataggtagaccatgataagttcaatacacctgtttaatctaatggtaaaaatctgacttttccattgtgggaaacaactt 14285931  T
Q  117 tactgtcccaggttaaatgtcacc 140  Q
    ||||| ||||   |||||||||||    
T  14285932 tactgacccatactaaatgtcacc 14285955  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 42645458 - 42645372
Alignment:
Q  11 ttccagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttc 97  Q
    ||||||||||||| ||||||||  ||| ||  | || ||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  42645458 ttccagatctagaagatgaatagagtacaggtaaactatgataagatcaatacacctctttaatctaatggtgaaaatccaactttc 42645372  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 1013381 - 1013461
Alignment:
Q  2 tgtgtgaaattccagatct-agaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatgg 81  Q
    ||||| ||||||||||||| ||||||||||||| |||| |   ||||||| ||||||||||| | ||| ||||||||||||    
T  1013381 tgtgtaaaattccagatcttagaggatgaataaagtatgggtggaccatgataagatcaatagacctcattaatctaatgg 1013461  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 30466871 - 30467003
Alignment:
Q  8 aaattccagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtggg 107  Q
    |||| ||||| |||||||||||||||  || ||  ||| |||| ||||| || ||||   ||||||||||||||||||||| ||||||||  ||| ||||    
T  30466871 aaataccagagctagaggatgaataaaatacaggtagatcatgataagaccagtacactactttaatctaatggtaaaaattcaactttcccatgatggg 30466970  T
Q  108 aaaaaactttactgtcccaggttaaatgtcacc 140  Q
    | ||||| | |||| || ||| |||||| ||||    
T  30466971 agaaaacatcactgccctaggctaaatgccacc 30467003  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 37423053 - 37423101
Alignment:
Q  69 tttaatctaatggtaaaaatccaactttcttatggtgggaaaaaacttt 117  Q
    ||||||||| ||||| |||| ||||||||  ||||||||||||||||||    
T  37423053 tttaatctagtggtagaaattcaactttcccatggtgggaaaaaacttt 37423101  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 43588389 - 43588316
Alignment:
Q  43 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaaaaaactt 116  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||| ||||||  ||||||||||||| ||||    
T  43588389 agaccatgataagatcaatagacctctttaatctaatggtaaaaatctaactttactatggtgggaaaagactt 43588316  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 4608508 - 4608638
Alignment:
Q  11 ttccagatct-agaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttcttatggtgggaa 109  Q
    |||||||||| ||||||||||||| |||| |   ||||||||||||||||||||| ||| ||||||||||||  |||    |||||||  ||||||||||    
T  4608508 ttccagatcttagaggatgaataaagtatgggtggaccatggtaagatcaatacatctcattaatctaatggctaaatctaaactttcccatggtgggaa 4608607  T
Q  110 aaaactttactgtcccaggttaaatgtcacc 140  Q
    | ||| || || |||||| ||||||| ||||    
T  4608608 ataacattcctttcccagattaaatggcacc 4608638  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 5766815 - 5766869
Alignment:
Q  43 agaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttc 97  Q
    |||||||  ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  5766815 agaccattataagatcaatacacctctttaatctgatggtaaaaatccaactttc 5766869  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 2501892 - 2501800
Alignment:
Q  8 aaattccagatctagaggatga---ataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaactttc 97  Q
    |||||||||||||| |||||||   |||| ||  ||| |||||||| ||||||||||||| || ||||||| |||||||||||| ||||||||    
T  2501892 aaattccagatctaaaggatgatttataaagtgcagagagaccatgataagatcaatacacctttttaatcaaatggtaaaaattcaactttc 2501800  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 2992112 - 2992060
Alignment:
Q  29 aataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatgg 81  Q
    |||| |||||||| |||||||| ||| || |||||| ||||||||||||||||    
T  2992112 aatattgtatagatagaccatgataaaattaatacacctctttaatctaatgg 2992060  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 5278324 - 5278372
Alignment:
Q  92 actttcttatggtgggaaaaaactttactgtcccaggttaaatgtcacc 140  Q
    ||||| |||||||||||||||| || | |||||||||||||||| ||||    
T  5278324 acttttttatggtgggaaaaaatttcattgtcccaggttaaatgccacc 5278372  T

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