View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_111 (Length: 266)
Name: NF18178_high_111
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_111 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 49101914 - 49101665
Alignment:
| Q |
1 |
tgattaatataaggtcccatttgtatcacaaaggggcttttaaggttcatttttgcaactcctcttttctccaaatcatacctcactctgcctctcatgc |
100 |
Q |
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| T |
49101914 |
tgattaatataaggtcccatttgtatcacaaaggggcttttaaggttcatttttgcaactcctcttttctccaaatcatacctcactctgcctctcatgc |
49101815 |
T |
|
| Q |
101 |
acgcttcttttcatatttttcctctcacacttatgcatctaagttcaaaccaacatcactttcagactttcacaacatactcaccaagaatttcatggac |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49101814 |
acgcttcctttcatatttttcctctcacacttatgcatctaagttcaaaccaacatcactttcagactttcacaacatactcaccaaaaatttcatggac |
49101715 |
T |
|
| Q |
201 |
cctgatgagttttcaatatcaacaataatttactttaacttatcacattt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49101714 |
cctgatgagttttcaatatcaacaataatttactttaacttatcacattt |
49101665 |
T |
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