View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_high_114 (Length: 261)
Name: NF18178_high_114
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_114 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 9567048 - 9566807
Alignment:
| Q |
20 |
gaatcgaaaccaaacatacgctaatatgatctctatttcaattttctgaactttgttaaagttttataaaatcgcaaaggttaccagcagtcaaggctta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9567048 |
gaatcgaaaccaaacatacgctaatatgatctctatttcaattttctgaactttgttaaagttttataaaatcgcaaaggttagcagcagtcaaggctta |
9566949 |
T |
|
| Q |
120 |
ttaggccaaccagaatggggcatataatagcatgttgaattatgttagcattacattccttaatcttttattagttgaaattcatacgagtcctactaaa |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9566948 |
ttaggccaaccagaatggggtatataatagcatgttgaattatgttagcattacattccttaatcttttattagttgaaattcatacgagtcctactaaa |
9566849 |
T |
|
| Q |
220 |
tttatgtaaggcttacatgaataatttagtgaaattcgttta |
261 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9566848 |
tttatgtaaagcttacatgaataatttagtgaaattcgttta |
9566807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 827509 - 827551
Alignment:
| Q |
184 |
cttttattagttgaaattcatacgagtcctactaaatttatgt |
226 |
Q |
| |
|
|||||||| ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
827509 |
cttttattggttgaaattcatacgggtcccactaaatttatgt |
827551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University