View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_high_115 (Length: 261)
Name: NF18178_high_115
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_115 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9566702 - 9566455
Alignment:
| Q |
1 |
aataacatttatcgatccacaaaaacatacacaaatttcgtcctaatagcagctttctccatccaacaagtggatgtaagaatttcagcattagtattat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9566702 |
aataacatttgtcgatccacaaaaacatacacaaatttcgtcctaataacagctttctccaaccaacaagtggatgtaagaatttcagcattagtattat |
9566603 |
T |
|
| Q |
101 |
attgctttttgtacaagaaatgattaatctcatgtcacggatttgagtgattagttgttcttaggaaagctcatatgtctaggtttcaaacgacatatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9566602 |
attgctttttgtacaagaaatgattaatctcatgtcacggatttgagtgattagttgttcttaggaaagctcatatgtctaggtttcaaacgacatatcc |
9566503 |
T |
|
| Q |
201 |
aaccctccatgttgtatgttgcatcttgcaatttaaatactatatact |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9566502 |
aaccctccatgttgtatgttgcatcttgcaatttaaatactatatact |
9566455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University