View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_high_122 (Length: 252)
Name: NF18178_high_122
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_122 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 49425755 - 49425961
Alignment:
| Q |
27 |
tcaattgatgaaaaatgttttgagagatcaactactcgtttaatggaagtaagttgagtttttatgagcttggtgtttgtggcttttatgttttataaaa |
126 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49425755 |
tcaattgatgaaaaatgttt-gagatatcaactactcgtttaatggaagtaagttaagtttttatgagcttggtgtttgtggcttttatgttttatgaaa |
49425853 |
T |
|
| Q |
127 |
taatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagtt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425854 |
taatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagtt |
49425953 |
T |
|
| Q |
227 |
gaaactat |
234 |
Q |
| |
|
|||||||| |
|
|
| T |
49425954 |
gaaactat |
49425961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 49423669 - 49423805
Alignment:
| Q |
99 |
gtgtttgtggcttttatgttttataaaataatttgctcgagtacatgaagttgtaacatgacattgccaatatg-aattggcgaaatcttaagagcgtaa |
197 |
Q |
| |
|
|||| ||| |||||||| ||| || ||||||||||||||||| |||||||||||||| ||| ||||| ||| || ||| | |||||| || |||| ||| |
|
|
| T |
49423669 |
gtgtctgttgcttttatatttcatgaaataatttgctcgagtgcatgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataa |
49423768 |
T |
|
| Q |
198 |
gaaatgctatccctaatgtcttgaaagttgaaactat |
234 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
49423769 |
aaaatgttatccctaatgtcttgaaagttgaatctat |
49423805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 43363344 - 43363255
Alignment:
| Q |
143 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatt |
235 |
Q |
| |
|
||||||||||||||||| |||| ||| || | ||| |||| ||||||||| ||| ||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
43363344 |
atgaagttgtaacatga--ttgcaaatgtgcaatggtgaaagcttaagagcataa-aaatgttatcccttatgtcttgaaagttgaatctatt |
43363255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University