View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_high_124 (Length: 250)
Name: NF18178_high_124
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_124 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 51000528 - 51000416
Alignment:
| Q |
129 |
atgcagatgacatgatgctacattggaaccagaattctggttaatcttagtaatatcaagcacaattgtgttgattttctgtgctatctttcttttaagc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51000528 |
atgcagatgacatgatgctacattggaaccagaattctggttaatcttagtaatatcaagcacaattgtgttgattttctgtgctatctttcttttaagc |
51000429 |
T |
|
| Q |
229 |
atggttcctatga |
241 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
51000428 |
atgtttcctatga |
51000416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 51000658 - 51000577
Alignment:
| Q |
1 |
aataaaaaatcaacttaaacatattcttttgaattgcaggcagttcaaggacattgtcctcgtgcattacggagaggtatgc |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51000658 |
aataaaaaatcaacttaaacatattcttttgaattgcaggcagttcaaggacattgtcctcgtgcattacggagaggtatgc |
51000577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University